Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17640 and ABID97_RS17645 overlap by 4 nucleotides ABID97_RS17645 and ABID97_RS17650 are separated by 36 nucleotides ABID97_RS17650 and ABID97_RS17655 are separated by 9 nucleotides ABID97_RS17655 and ABID97_RS17660 are separated by 15 nucleotides
ABID97_RS17640: ABID97_RS17640 - hydroxysqualene dehydroxylase HpnE, at 3,645,582 to 3,646,841
_RS17640
ABID97_RS17645: ABID97_RS17645 - hypothetical protein, at 3,646,838 to 3,647,140
_RS17645
ABID97_RS17650: ABID97_RS17650 - NIPSNAP family protein, at 3,647,177 to 3,647,482
_RS17650
ABID97_RS17655: ABID97_RS17655 - HAD-IA family hydrolase, at 3,647,492 to 3,648,223
_RS17655
ABID97_RS17660: ABID97_RS17660 - ferrochelatase, at 3,648,239 to 3,649,273
_RS17660
Position (kb)
3647
3648
3649 Strain fitness (log2 ratio)
-1
0
1 at 3646.773 kb on + strand at 3647.291 kb on + strand, within ABID97_RS17650 at 3647.292 kb on - strand, within ABID97_RS17650 at 3647.417 kb on + strand, within ABID97_RS17650 at 3647.417 kb on + strand, within ABID97_RS17650 at 3647.418 kb on - strand, within ABID97_RS17650 at 3647.859 kb on + strand, within ABID97_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,646,773 + -0.1 3,647,291 + ABID97_RS17650 0.37 -0.8 3,647,292 - ABID97_RS17650 0.38 -0.1 3,647,417 + ABID97_RS17650 0.78 -0.5 3,647,417 + ABID97_RS17650 0.78 -0.5 3,647,418 - ABID97_RS17650 0.79 -0.2 3,647,859 + ABID97_RS17655 0.50 -1.6
Or see this region's nucleotide sequence