Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17655

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17640 and ABID97_RS17645 overlap by 4 nucleotidesABID97_RS17645 and ABID97_RS17650 are separated by 36 nucleotidesABID97_RS17650 and ABID97_RS17655 are separated by 9 nucleotidesABID97_RS17655 and ABID97_RS17660 are separated by 15 nucleotides ABID97_RS17640: ABID97_RS17640 - hydroxysqualene dehydroxylase HpnE, at 3,645,582 to 3,646,841 _RS17640 ABID97_RS17645: ABID97_RS17645 - hypothetical protein, at 3,646,838 to 3,647,140 _RS17645 ABID97_RS17650: ABID97_RS17650 - NIPSNAP family protein, at 3,647,177 to 3,647,482 _RS17650 ABID97_RS17655: ABID97_RS17655 - HAD-IA family hydrolase, at 3,647,492 to 3,648,223 _RS17655 ABID97_RS17660: ABID97_RS17660 - ferrochelatase, at 3,648,239 to 3,649,273 _RS17660 Position (kb) 3647 3648 3649Strain fitness (log2 ratio) -1 0 1at 3646.773 kb on + strandat 3647.291 kb on + strand, within ABID97_RS17650at 3647.292 kb on - strand, within ABID97_RS17650at 3647.417 kb on + strand, within ABID97_RS17650at 3647.417 kb on + strand, within ABID97_RS17650at 3647.418 kb on - strand, within ABID97_RS17650at 3647.859 kb on + strand, within ABID97_RS17655

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,646,773 + -0.1
3,647,291 + ABID97_RS17650 0.37 -0.8
3,647,292 - ABID97_RS17650 0.38 -0.1
3,647,417 + ABID97_RS17650 0.78 -0.5
3,647,417 + ABID97_RS17650 0.78 -0.5
3,647,418 - ABID97_RS17650 0.79 -0.2
3,647,859 + ABID97_RS17655 0.50 -1.6

Or see this region's nucleotide sequence