Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16085 and ABID97_RS16090 are separated by 38 nucleotides ABID97_RS16090 and ABID97_RS16095 are separated by 178 nucleotides ABID97_RS16095 and ABID97_RS16100 are separated by 23 nucleotides ABID97_RS16100 and ABID97_RS16105 are separated by 287 nucleotides ABID97_RS16105 and ABID97_RS16110 are separated by 8 nucleotides
ABID97_RS16085: ABID97_RS16085 - L,D-transpeptidase, at 3,332,271 to 3,332,909
_RS16085
ABID97_RS16090: ABID97_RS16090 - proteophosphoglycan ppg4, at 3,332,948 to 3,333,244
_RS16090
ABID97_RS16095: ABID97_RS16095 - hypothetical protein, at 3,333,423 to 3,333,662
_RS16095
ABID97_RS16100: ABID97_RS16100 - hypothetical protein, at 3,333,686 to 3,333,946
_RS16100
ABID97_RS16105: ABID97_RS16105 - type IV pilin protein, at 3,334,234 to 3,334,638
_RS16105
ABID97_RS16110: ABID97_RS16110 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 3,334,647 to 3,335,225
_RS16110
Position (kb) 3333
3334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3332.512 kb on + strand, within ABID97_RS16085 at 3333.324 kb on - strand at 3333.370 kb on + strand at 3334.165 kb on + strand at 3334.165 kb on + strand at 3334.166 kb on - strand at 3334.166 kb on - strand at 3334.166 kb on - strand at 3334.166 kb on - strand at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.340 kb on - strand, within ABID97_RS16105 at 3334.349 kb on - strand, within ABID97_RS16105 at 3334.349 kb on - strand, within ABID97_RS16105 at 3334.501 kb on + strand, within ABID97_RS16105 at 3334.501 kb on + strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.502 kb on - strand, within ABID97_RS16105 at 3334.507 kb on + strand, within ABID97_RS16105 at 3334.507 kb on + strand, within ABID97_RS16105 at 3334.508 kb on - strand, within ABID97_RS16105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,332,512 + ABID97_RS16085 0.38 +0.3 3,333,324 - +1.8 3,333,370 + +0.0 3,334,165 + +1.9 3,334,165 + +0.0 3,334,166 - +1.6 3,334,166 - +0.1 3,334,166 - +0.4 3,334,166 - -0.0 3,334,340 - ABID97_RS16105 0.26 +0.4 3,334,340 - ABID97_RS16105 0.26 -2.3 3,334,340 - ABID97_RS16105 0.26 -1.1 3,334,349 - ABID97_RS16105 0.28 -0.5 3,334,349 - ABID97_RS16105 0.28 +0.3 3,334,501 + ABID97_RS16105 0.66 +0.2 3,334,501 + ABID97_RS16105 0.66 -0.2 3,334,502 - ABID97_RS16105 0.66 +3.9 3,334,502 - ABID97_RS16105 0.66 -0.5 3,334,502 - ABID97_RS16105 0.66 -1.4 3,334,502 - ABID97_RS16105 0.66 +0.6 3,334,507 + ABID97_RS16105 0.67 -0.2 3,334,507 + ABID97_RS16105 0.67 -0.3 3,334,508 - ABID97_RS16105 0.68 -1.4
Or see this region's nucleotide sequence