Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14675

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14670 and ABID97_RS14675 are separated by 24 nucleotidesABID97_RS14675 and ABID97_RS14680 are separated by 109 nucleotides ABID97_RS14670: ABID97_RS14670 - TIGR03862 family flavoprotein, at 3,053,226 to 3,054,464 _RS14670 ABID97_RS14675: ABID97_RS14675 - winged helix-turn-helix transcriptional regulator, at 3,054,489 to 3,055,178 _RS14675 ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160 _RS14680 Position (kb) 3054 3055 3056Strain fitness (log2 ratio) -1 0 1 2at 3053.983 kb on - strand, within ABID97_RS14670at 3053.983 kb on - strand, within ABID97_RS14670at 3054.241 kb on + strand, within ABID97_RS14670at 3054.648 kb on + strand, within ABID97_RS14675at 3055.154 kb on + strandat 3055.155 kb on - strandat 3055.169 kb on - strandat 3055.189 kb on + strandat 3055.299 kb on + strandat 3055.299 kb on + strandat 3055.300 kb on - strandat 3055.699 kb on + strand, within ABID97_RS14680at 3055.777 kb on + strand, within ABID97_RS14680at 3055.943 kb on + strand, within ABID97_RS14680at 3056.037 kb on - strand, within ABID97_RS14680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,053,983 - ABID97_RS14670 0.61 -0.4
3,053,983 - ABID97_RS14670 0.61 +0.1
3,054,241 + ABID97_RS14670 0.82 +2.1
3,054,648 + ABID97_RS14675 0.23 -1.3
3,055,154 + +0.5
3,055,155 - +0.9
3,055,169 - +0.4
3,055,189 + -0.0
3,055,299 + -0.3
3,055,299 + +0.5
3,055,300 - -0.0
3,055,699 + ABID97_RS14680 0.47 -0.4
3,055,777 + ABID97_RS14680 0.56 -0.1
3,055,943 + ABID97_RS14680 0.75 -0.7
3,056,037 - ABID97_RS14680 0.86 -0.5

Or see this region's nucleotide sequence