Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11985

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11975 and ABID97_RS11980 are separated by 206 nucleotidesABID97_RS11980 and ABID97_RS11985 are separated by 33 nucleotidesABID97_RS11985 and ABID97_RS11990 are separated by 244 nucleotidesABID97_RS11990 and ABID97_RS11995 are separated by 12 nucleotides ABID97_RS11975: ABID97_RS11975 - manganese catalase family protein, at 2,474,077 to 2,474,997 _RS11975 ABID97_RS11980: ABID97_RS11980 - KGG domain-containing protein, at 2,475,204 to 2,475,410 _RS11980 ABID97_RS11985: ABID97_RS11985 - hypothetical protein, at 2,475,444 to 2,476,013 _RS11985 ABID97_RS11990: ABID97_RS11990 - hypothetical protein, at 2,476,258 to 2,476,500 _RS11990 ABID97_RS11995: ABID97_RS11995 - SIR2 family protein, at 2,476,513 to 2,477,334 _RS11995 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -2 -1 0 1 2at 2474.705 kb on + strand, within ABID97_RS11975at 2474.705 kb on + strand, within ABID97_RS11975at 2474.970 kb on - strandat 2475.139 kb on + strandat 2475.715 kb on + strand, within ABID97_RS11985at 2475.715 kb on + strand, within ABID97_RS11985at 2475.918 kb on + strand, within ABID97_RS11985at 2476.498 kb on + strandat 2476.944 kb on - strand, within ABID97_RS11995at 2476.988 kb on + strand, within ABID97_RS11995at 2476.989 kb on - strand, within ABID97_RS11995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,474,705 + ABID97_RS11975 0.68 -0.0
2,474,705 + ABID97_RS11975 0.68 +2.2
2,474,970 - -0.7
2,475,139 + +0.0
2,475,715 + ABID97_RS11985 0.48 -0.1
2,475,715 + ABID97_RS11985 0.48 -2.1
2,475,918 + ABID97_RS11985 0.83 -1.1
2,476,498 + +0.8
2,476,944 - ABID97_RS11995 0.52 -0.7
2,476,988 + ABID97_RS11995 0.58 -0.5
2,476,989 - ABID97_RS11995 0.58 +0.1

Or see this region's nucleotide sequence