Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09790 and ABID97_RS09795 overlap by 4 nucleotides ABID97_RS09795 and ABID97_RS09800 are separated by 160 nucleotides ABID97_RS09800 and ABID97_RS09805 are separated by 177 nucleotides ABID97_RS09805 and ABID97_RS09810 are separated by 1 nucleotides
ABID97_RS09790: ABID97_RS09790 - hypothetical protein, at 2,043,102 to 2,043,404
_RS09790
ABID97_RS09795: ABID97_RS09795 - lysozyme, at 2,043,401 to 2,043,937
_RS09795
ABID97_RS09800: ABID97_RS09800 - hypothetical protein, at 2,044,098 to 2,044,475
_RS09800
ABID97_RS09805: ABID97_RS09805 - hypothetical protein, at 2,044,653 to 2,045,426
_RS09805
ABID97_RS09810: ABID97_RS09810 - hypothetical protein, at 2,045,428 to 2,045,817
_RS09810
Position (kb)
2044
2045 Strain fitness (log2 ratio)
-1
0
1
2 at 2043.357 kb on + strand, within ABID97_RS09790 at 2043.611 kb on + strand, within ABID97_RS09795 at 2043.740 kb on + strand, within ABID97_RS09795 at 2043.740 kb on + strand, within ABID97_RS09795 at 2044.097 kb on + strand at 2044.097 kb on + strand at 2044.098 kb on - strand at 2044.195 kb on - strand, within ABID97_RS09800 at 2044.442 kb on + strand at 2044.442 kb on + strand at 2044.479 kb on - strand at 2044.479 kb on - strand at 2044.479 kb on - strand at 2044.537 kb on + strand at 2044.538 kb on - strand at 2044.588 kb on + strand at 2044.612 kb on + strand at 2044.679 kb on + strand at 2044.679 kb on + strand at 2044.680 kb on - strand at 2044.726 kb on + strand at 2044.822 kb on - strand, within ABID97_RS09805 at 2044.836 kb on + strand, within ABID97_RS09805 at 2044.836 kb on + strand, within ABID97_RS09805 at 2044.837 kb on - strand, within ABID97_RS09805 at 2044.837 kb on - strand, within ABID97_RS09805 at 2044.837 kb on - strand, within ABID97_RS09805 at 2044.875 kb on + strand, within ABID97_RS09805 at 2044.875 kb on + strand, within ABID97_RS09805 at 2044.876 kb on - strand, within ABID97_RS09805 at 2044.943 kb on - strand, within ABID97_RS09805 at 2044.948 kb on + strand, within ABID97_RS09805 at 2044.948 kb on + strand, within ABID97_RS09805 at 2045.007 kb on - strand, within ABID97_RS09805 at 2045.035 kb on + strand, within ABID97_RS09805 at 2045.072 kb on - strand, within ABID97_RS09805 at 2045.128 kb on + strand, within ABID97_RS09805 at 2045.128 kb on + strand, within ABID97_RS09805 at 2045.129 kb on - strand, within ABID97_RS09805 at 2045.136 kb on - strand, within ABID97_RS09805 at 2045.136 kb on - strand, within ABID97_RS09805 at 2045.136 kb on - strand, within ABID97_RS09805 at 2045.191 kb on + strand, within ABID97_RS09805 at 2045.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,043,357 + ABID97_RS09790 0.84 -0.3 2,043,611 + ABID97_RS09795 0.39 +0.4 2,043,740 + ABID97_RS09795 0.63 +1.1 2,043,740 + ABID97_RS09795 0.63 -1.1 2,044,097 + +1.5 2,044,097 + -0.5 2,044,098 - +1.3 2,044,195 - ABID97_RS09800 0.26 -0.9 2,044,442 + -0.7 2,044,442 + -0.4 2,044,479 - -0.3 2,044,479 - -0.8 2,044,479 - +0.1 2,044,537 + +0.1 2,044,538 - +0.9 2,044,588 + +0.6 2,044,612 + +0.3 2,044,679 + -0.1 2,044,679 + -0.5 2,044,680 - +1.5 2,044,726 + +0.5 2,044,822 - ABID97_RS09805 0.22 +0.1 2,044,836 + ABID97_RS09805 0.24 -0.0 2,044,836 + ABID97_RS09805 0.24 -0.7 2,044,837 - ABID97_RS09805 0.24 -0.2 2,044,837 - ABID97_RS09805 0.24 +1.1 2,044,837 - ABID97_RS09805 0.24 +1.2 2,044,875 + ABID97_RS09805 0.29 -0.6 2,044,875 + ABID97_RS09805 0.29 +2.1 2,044,876 - ABID97_RS09805 0.29 +2.1 2,044,943 - ABID97_RS09805 0.37 +0.9 2,044,948 + ABID97_RS09805 0.38 -1.3 2,044,948 + ABID97_RS09805 0.38 -0.3 2,045,007 - ABID97_RS09805 0.46 -1.0 2,045,035 + ABID97_RS09805 0.49 +0.9 2,045,072 - ABID97_RS09805 0.54 +0.3 2,045,128 + ABID97_RS09805 0.61 -0.4 2,045,128 + ABID97_RS09805 0.61 +0.9 2,045,129 - ABID97_RS09805 0.61 +0.4 2,045,136 - ABID97_RS09805 0.62 -1.7 2,045,136 - ABID97_RS09805 0.62 +0.3 2,045,136 - ABID97_RS09805 0.62 -0.1 2,045,191 + ABID97_RS09805 0.70 -0.5 2,045,362 + +0.0
Or see this region's nucleotide sequence