Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09800

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09790 and ABID97_RS09795 overlap by 4 nucleotidesABID97_RS09795 and ABID97_RS09800 are separated by 160 nucleotidesABID97_RS09800 and ABID97_RS09805 are separated by 177 nucleotidesABID97_RS09805 and ABID97_RS09810 are separated by 1 nucleotides ABID97_RS09790: ABID97_RS09790 - hypothetical protein, at 2,043,102 to 2,043,404 _RS09790 ABID97_RS09795: ABID97_RS09795 - lysozyme, at 2,043,401 to 2,043,937 _RS09795 ABID97_RS09800: ABID97_RS09800 - hypothetical protein, at 2,044,098 to 2,044,475 _RS09800 ABID97_RS09805: ABID97_RS09805 - hypothetical protein, at 2,044,653 to 2,045,426 _RS09805 ABID97_RS09810: ABID97_RS09810 - hypothetical protein, at 2,045,428 to 2,045,817 _RS09810 Position (kb) 2044 2045Strain fitness (log2 ratio) -1 0 1 2at 2043.357 kb on + strand, within ABID97_RS09790at 2043.611 kb on + strand, within ABID97_RS09795at 2043.740 kb on + strand, within ABID97_RS09795at 2043.740 kb on + strand, within ABID97_RS09795at 2044.097 kb on + strandat 2044.097 kb on + strandat 2044.098 kb on - strandat 2044.195 kb on - strand, within ABID97_RS09800at 2044.442 kb on + strandat 2044.442 kb on + strandat 2044.479 kb on - strandat 2044.479 kb on - strandat 2044.479 kb on - strandat 2044.537 kb on + strandat 2044.538 kb on - strandat 2044.588 kb on + strandat 2044.612 kb on + strandat 2044.679 kb on + strandat 2044.679 kb on + strandat 2044.680 kb on - strandat 2044.726 kb on + strandat 2044.822 kb on - strand, within ABID97_RS09805at 2044.836 kb on + strand, within ABID97_RS09805at 2044.836 kb on + strand, within ABID97_RS09805at 2044.837 kb on - strand, within ABID97_RS09805at 2044.837 kb on - strand, within ABID97_RS09805at 2044.837 kb on - strand, within ABID97_RS09805at 2044.875 kb on + strand, within ABID97_RS09805at 2044.875 kb on + strand, within ABID97_RS09805at 2044.876 kb on - strand, within ABID97_RS09805at 2044.943 kb on - strand, within ABID97_RS09805at 2044.948 kb on + strand, within ABID97_RS09805at 2044.948 kb on + strand, within ABID97_RS09805at 2045.007 kb on - strand, within ABID97_RS09805at 2045.035 kb on + strand, within ABID97_RS09805at 2045.072 kb on - strand, within ABID97_RS09805at 2045.128 kb on + strand, within ABID97_RS09805at 2045.128 kb on + strand, within ABID97_RS09805at 2045.129 kb on - strand, within ABID97_RS09805at 2045.136 kb on - strand, within ABID97_RS09805at 2045.136 kb on - strand, within ABID97_RS09805at 2045.136 kb on - strand, within ABID97_RS09805at 2045.191 kb on + strand, within ABID97_RS09805at 2045.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,043,357 + ABID97_RS09790 0.84 -0.3
2,043,611 + ABID97_RS09795 0.39 +0.4
2,043,740 + ABID97_RS09795 0.63 +1.1
2,043,740 + ABID97_RS09795 0.63 -1.1
2,044,097 + +1.5
2,044,097 + -0.5
2,044,098 - +1.3
2,044,195 - ABID97_RS09800 0.26 -0.9
2,044,442 + -0.7
2,044,442 + -0.4
2,044,479 - -0.3
2,044,479 - -0.8
2,044,479 - +0.1
2,044,537 + +0.1
2,044,538 - +0.9
2,044,588 + +0.6
2,044,612 + +0.3
2,044,679 + -0.1
2,044,679 + -0.5
2,044,680 - +1.5
2,044,726 + +0.5
2,044,822 - ABID97_RS09805 0.22 +0.1
2,044,836 + ABID97_RS09805 0.24 -0.0
2,044,836 + ABID97_RS09805 0.24 -0.7
2,044,837 - ABID97_RS09805 0.24 -0.2
2,044,837 - ABID97_RS09805 0.24 +1.1
2,044,837 - ABID97_RS09805 0.24 +1.2
2,044,875 + ABID97_RS09805 0.29 -0.6
2,044,875 + ABID97_RS09805 0.29 +2.1
2,044,876 - ABID97_RS09805 0.29 +2.1
2,044,943 - ABID97_RS09805 0.37 +0.9
2,044,948 + ABID97_RS09805 0.38 -1.3
2,044,948 + ABID97_RS09805 0.38 -0.3
2,045,007 - ABID97_RS09805 0.46 -1.0
2,045,035 + ABID97_RS09805 0.49 +0.9
2,045,072 - ABID97_RS09805 0.54 +0.3
2,045,128 + ABID97_RS09805 0.61 -0.4
2,045,128 + ABID97_RS09805 0.61 +0.9
2,045,129 - ABID97_RS09805 0.61 +0.4
2,045,136 - ABID97_RS09805 0.62 -1.7
2,045,136 - ABID97_RS09805 0.62 +0.3
2,045,136 - ABID97_RS09805 0.62 -0.1
2,045,191 + ABID97_RS09805 0.70 -0.5
2,045,362 + +0.0

Or see this region's nucleotide sequence