Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04295 and ABID97_RS04300 are separated by 12 nucleotides ABID97_RS04300 and ABID97_RS04305 overlap by 4 nucleotides ABID97_RS04305 and ABID97_RS04310 overlap by 4 nucleotides ABID97_RS04310 and ABID97_RS04315 overlap by 4 nucleotides
ABID97_RS04295: ABID97_RS04295 - SDR family oxidoreductase, at 882,291 to 883,004
_RS04295
ABID97_RS04300: ABID97_RS04300 - ABC transporter ATP-binding protein, at 883,017 to 883,742
_RS04300
ABID97_RS04305: ABID97_RS04305 - ABC transporter ATP-binding protein, at 883,739 to 884,494
_RS04305
ABID97_RS04310: ABID97_RS04310 - branched-chain amino acid ABC transporter permease, at 884,491 to 885,474
_RS04310
ABID97_RS04315: ABID97_RS04315 - branched-chain amino acid ABC transporter permease, at 885,471 to 886,391
_RS04315
Position (kb) 883
884
885 Strain fitness (log2 ratio) -1
0
1 at 882.792 kb on + strand, within ABID97_RS04295 at 882.793 kb on - strand, within ABID97_RS04295 at 882.951 kb on + strand at 883.031 kb on - strand at 883.144 kb on + strand, within ABID97_RS04300 at 883.145 kb on - strand, within ABID97_RS04300 at 883.370 kb on - strand, within ABID97_RS04300 at 883.770 kb on + strand at 884.228 kb on + strand, within ABID97_RS04305 at 884.499 kb on + strand at 884.552 kb on + strand at 884.552 kb on + strand at 884.553 kb on - strand at 884.984 kb on + strand, within ABID97_RS04310 at 885.047 kb on + strand, within ABID97_RS04310 at 885.093 kb on - strand, within ABID97_RS04310 at 885.093 kb on - strand, within ABID97_RS04310 at 885.093 kb on - strand, within ABID97_RS04310 at 885.131 kb on + strand, within ABID97_RS04310 at 885.132 kb on - strand, within ABID97_RS04310 at 885.132 kb on - strand, within ABID97_RS04310 at 885.132 kb on - strand, within ABID97_RS04310 at 885.257 kb on + strand, within ABID97_RS04310 at 885.258 kb on - strand, within ABID97_RS04310 at 885.377 kb on + strand at 885.378 kb on - strand at 885.452 kb on + strand at 885.452 kb on + strand at 885.453 kb on - strand at 885.453 kb on - strand at 885.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 882,792 + ABID97_RS04295 0.70 -0.1 882,793 - ABID97_RS04295 0.70 -0.4 882,951 + +0.7 883,031 - +0.3 883,144 + ABID97_RS04300 0.17 -0.1 883,145 - ABID97_RS04300 0.18 +0.1 883,370 - ABID97_RS04300 0.49 -0.7 883,770 + +1.2 884,228 + ABID97_RS04305 0.65 -1.2 884,499 + -0.1 884,552 + +0.6 884,552 + -0.9 884,553 - -0.0 884,984 + ABID97_RS04310 0.50 -1.2 885,047 + ABID97_RS04310 0.57 -0.5 885,093 - ABID97_RS04310 0.61 +1.0 885,093 - ABID97_RS04310 0.61 -0.5 885,093 - ABID97_RS04310 0.61 -0.0 885,131 + ABID97_RS04310 0.65 -0.4 885,132 - ABID97_RS04310 0.65 +0.8 885,132 - ABID97_RS04310 0.65 +0.2 885,132 - ABID97_RS04310 0.65 -0.7 885,257 + ABID97_RS04310 0.78 +1.7 885,258 - ABID97_RS04310 0.78 +0.2 885,377 + -0.7 885,378 - -0.4 885,452 + -0.1 885,452 + +0.6 885,453 - -0.8 885,453 - +0.3 885,453 - +0.2
Or see this region's nucleotide sequence