Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02275 and ABID97_RS02280 are separated by 145 nucleotides ABID97_RS02280 and ABID97_RS02285 are separated by 67 nucleotides ABID97_RS02285 and ABID97_RS02290 are separated by 37 nucleotides
ABID97_RS02275: ABID97_RS02275 - recombinase RecA, at 459,005 to 460,120
_RS02275
ABID97_RS02280: ABID97_RS02280 - helix-turn-helix domain-containing protein, at 460,266 to 460,751
_RS02280
ABID97_RS02285: ABID97_RS02285 - response regulator transcription factor, at 460,819 to 461,493
_RS02285
ABID97_RS02290: ABID97_RS02290 - sensor histidine kinase N-terminal domain-containing protein, at 461,531 to 462,976
_RS02290
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 459.891 kb on + strand, within ABID97_RS02275 at 459.892 kb on - strand, within ABID97_RS02275 at 459.892 kb on - strand, within ABID97_RS02275 at 460.207 kb on - strand at 460.207 kb on - strand at 460.718 kb on - strand at 460.737 kb on + strand at 460.737 kb on + strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.740 kb on - strand at 460.740 kb on - strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 461.006 kb on + strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.221 kb on + strand, within ABID97_RS02285 at 461.222 kb on - strand, within ABID97_RS02285 at 461.222 kb on - strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.398 kb on + strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.399 kb on - strand, within ABID97_RS02285 at 461.468 kb on - strand at 461.684 kb on + strand, within ABID97_RS02290 at 461.684 kb on + strand, within ABID97_RS02290 at 461.685 kb on - strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.795 kb on + strand, within ABID97_RS02290 at 461.796 kb on - strand, within ABID97_RS02290 at 461.798 kb on + strand, within ABID97_RS02290 at 461.798 kb on + strand, within ABID97_RS02290 at 461.798 kb on + strand, within ABID97_RS02290 at 461.798 kb on + strand, within ABID97_RS02290 at 461.799 kb on - strand, within ABID97_RS02290 at 461.799 kb on - strand, within ABID97_RS02290 at 461.799 kb on - strand, within ABID97_RS02290 at 461.799 kb on - strand, within ABID97_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 459,891 + ABID97_RS02275 0.79 +0.6 459,892 - ABID97_RS02275 0.79 -0.6 459,892 - ABID97_RS02275 0.79 -1.9 460,207 - +1.0 460,207 - +0.8 460,718 - -0.3 460,737 + +0.1 460,737 + +0.0 460,738 - -0.2 460,738 - +0.0 460,738 - -1.0 460,738 - -0.1 460,738 - +0.2 460,738 - -0.2 460,738 - -0.1 460,738 - -0.1 460,738 - +0.3 460,739 + -0.2 460,739 + -0.1 460,739 + -0.9 460,739 + -0.5 460,739 + -2.2 460,739 + +0.7 460,740 - +0.1 460,740 - -1.1 460,769 + -0.2 460,769 + -0.5 460,769 + -1.3 460,769 + -0.0 460,769 + -0.0 460,769 + -0.6 460,769 + +0.2 460,769 + -0.2 460,769 + -1.5 460,769 + -0.3 460,769 + -1.1 460,769 + +0.3 460,769 + +0.1 460,769 + -0.8 460,769 + -0.4 460,769 + +0.0 460,770 - -2.1 460,770 - -1.2 460,770 - -1.8 460,770 - -2.1 460,770 - +0.7 460,770 - -1.9 460,770 - -0.8 460,770 - -0.9 460,770 - -0.8 460,770 - -0.3 460,770 - -1.7 460,770 - -1.8 460,770 - -1.5 460,770 - -1.6 460,770 - -1.9 460,770 - -1.3 460,770 - -2.0 460,770 - -1.0 460,770 - -2.4 461,006 + ABID97_RS02285 0.28 -0.9 461,007 - ABID97_RS02285 0.28 -1.4 461,007 - ABID97_RS02285 0.28 -1.4 461,007 - ABID97_RS02285 0.28 +0.9 461,007 - ABID97_RS02285 0.28 +1.0 461,007 - ABID97_RS02285 0.28 -2.4 461,113 + ABID97_RS02285 0.44 -2.2 461,113 + ABID97_RS02285 0.44 -2.1 461,113 + ABID97_RS02285 0.44 -2.0 461,113 + ABID97_RS02285 0.44 -1.5 461,113 + ABID97_RS02285 0.44 -2.6 461,113 + ABID97_RS02285 0.44 -3.0 461,114 - ABID97_RS02285 0.44 -2.0 461,114 - ABID97_RS02285 0.44 -2.7 461,114 - ABID97_RS02285 0.44 -0.7 461,114 - ABID97_RS02285 0.44 -2.0 461,114 - ABID97_RS02285 0.44 -2.2 461,114 - ABID97_RS02285 0.44 -1.8 461,221 + ABID97_RS02285 0.60 -2.2 461,222 - ABID97_RS02285 0.60 -1.8 461,222 - ABID97_RS02285 0.60 -2.1 461,398 + ABID97_RS02285 0.86 -2.9 461,398 + ABID97_RS02285 0.86 -2.5 461,398 + ABID97_RS02285 0.86 -1.8 461,398 + ABID97_RS02285 0.86 -1.3 461,398 + ABID97_RS02285 0.86 -1.8 461,398 + ABID97_RS02285 0.86 -2.5 461,398 + ABID97_RS02285 0.86 -2.9 461,399 - ABID97_RS02285 0.86 -1.8 461,399 - ABID97_RS02285 0.86 +1.7 461,399 - ABID97_RS02285 0.86 -1.6 461,399 - ABID97_RS02285 0.86 -1.7 461,399 - ABID97_RS02285 0.86 -2.5 461,399 - ABID97_RS02285 0.86 -1.8 461,468 - -0.8 461,684 + ABID97_RS02290 0.11 -0.0 461,684 + ABID97_RS02290 0.11 -2.2 461,685 - ABID97_RS02290 0.11 -2.0 461,795 + ABID97_RS02290 0.18 -0.6 461,795 + ABID97_RS02290 0.18 -0.3 461,795 + ABID97_RS02290 0.18 +0.5 461,795 + ABID97_RS02290 0.18 -0.2 461,795 + ABID97_RS02290 0.18 -0.3 461,795 + ABID97_RS02290 0.18 +1.7 461,795 + ABID97_RS02290 0.18 -0.6 461,795 + ABID97_RS02290 0.18 +0.2 461,796 - ABID97_RS02290 0.18 -1.6 461,798 + ABID97_RS02290 0.18 -0.8 461,798 + ABID97_RS02290 0.18 -1.4 461,798 + ABID97_RS02290 0.18 -1.0 461,798 + ABID97_RS02290 0.18 +0.7 461,799 - ABID97_RS02290 0.19 -0.7 461,799 - ABID97_RS02290 0.19 -1.4 461,799 - ABID97_RS02290 0.19 +0.1 461,799 - ABID97_RS02290 0.19 -1.5
Or see this region's nucleotide sequence