Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01410 and ABID97_RS01415 are separated by 71 nucleotides ABID97_RS01415 and ABID97_RS01420 are separated by 12 nucleotides ABID97_RS01420 and ABID97_RS01425 are separated by 116 nucleotides
ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806
_RS01410
ABID97_RS01415: ABID97_RS01415 - DUF1840 domain-containing protein, at 285,878 to 286,201
_RS01415
ABID97_RS01420: ABID97_RS01420 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 286,214 to 287,482
_RS01420
ABID97_RS01425: ABID97_RS01425 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 287,599 to 289,986
_RS01425
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 285.241 kb on + strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.259 kb on - strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 286.006 kb on - strand, within ABID97_RS01415 at 286.221 kb on + strand at 286.221 kb on + strand at 286.221 kb on + strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.227 kb on + strand at 286.227 kb on + strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.246 kb on - strand at 286.266 kb on - strand at 286.491 kb on + strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.635 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.911 kb on + strand, within ABID97_RS01420 at 287.059 kb on - strand, within ABID97_RS01420 at 287.059 kb on - strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.101 kb on - strand, within ABID97_RS01420 at 287.286 kb on - strand, within ABID97_RS01420 at 287.301 kb on + strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.468 kb on + strand at 287.496 kb on + strand at 287.497 kb on - strand at 287.552 kb on + strand at 287.553 kb on - strand at 287.553 kb on - strand at 287.555 kb on + strand at 287.556 kb on - strand at 287.556 kb on - strand at 287.556 kb on - strand at 288.034 kb on + strand, within ABID97_RS01425 at 288.035 kb on - strand, within ABID97_RS01425 at 288.275 kb on + strand, within ABID97_RS01425 at 288.350 kb on - strand, within ABID97_RS01425 at 288.350 kb on - strand, within ABID97_RS01425
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 285,241 + ABID97_RS01410 0.44 -0.4 285,242 - ABID97_RS01410 0.44 -0.3 285,242 - ABID97_RS01410 0.44 -0.3 285,242 - ABID97_RS01410 0.44 -0.3 285,242 - ABID97_RS01410 0.44 -0.2 285,242 - ABID97_RS01410 0.44 -0.4 285,259 - ABID97_RS01410 0.46 -0.3 285,375 + ABID97_RS01410 0.57 +0.4 285,375 + ABID97_RS01410 0.57 +0.1 285,376 - ABID97_RS01410 0.57 +0.2 285,376 - ABID97_RS01410 0.57 -0.4 285,376 - ABID97_RS01410 0.57 +0.9 286,006 - ABID97_RS01415 0.40 -0.7 286,221 + +1.8 286,221 + +0.7 286,221 + +0.0 286,222 - +1.8 286,222 - +1.3 286,222 - +1.5 286,222 - +1.5 286,227 + +1.3 286,227 + +0.3 286,228 - +1.3 286,228 - +1.7 286,228 - +1.4 286,228 - +1.3 286,228 - +1.9 286,228 - +1.4 286,246 - +1.5 286,266 - +1.2 286,491 + ABID97_RS01420 0.22 +0.8 286,492 - ABID97_RS01420 0.22 +2.0 286,492 - ABID97_RS01420 0.22 +1.8 286,492 - ABID97_RS01420 0.22 +1.6 286,492 - ABID97_RS01420 0.22 +1.1 286,593 + ABID97_RS01420 0.30 +1.7 286,593 + ABID97_RS01420 0.30 +1.7 286,593 + ABID97_RS01420 0.30 +1.3 286,593 + ABID97_RS01420 0.30 +1.3 286,593 + ABID97_RS01420 0.30 +2.6 286,593 + ABID97_RS01420 0.30 +1.7 286,594 - ABID97_RS01420 0.30 +2.3 286,594 - ABID97_RS01420 0.30 +2.3 286,594 - ABID97_RS01420 0.30 +1.3 286,594 - ABID97_RS01420 0.30 +1.6 286,594 - ABID97_RS01420 0.30 +2.2 286,594 - ABID97_RS01420 0.30 +1.8 286,594 - ABID97_RS01420 0.30 +3.0 286,594 - ABID97_RS01420 0.30 +0.9 286,635 + ABID97_RS01420 0.33 +1.6 286,713 + ABID97_RS01420 0.39 +2.6 286,713 + ABID97_RS01420 0.39 +1.9 286,713 + ABID97_RS01420 0.39 +2.3 286,713 + ABID97_RS01420 0.39 +1.8 286,714 - ABID97_RS01420 0.39 +1.4 286,714 - ABID97_RS01420 0.39 +1.1 286,714 - ABID97_RS01420 0.39 +1.6 286,911 + ABID97_RS01420 0.55 +1.9 287,059 - ABID97_RS01420 0.67 +1.7 287,059 - ABID97_RS01420 0.67 +2.6 287,070 + ABID97_RS01420 0.67 +1.7 287,070 + ABID97_RS01420 0.67 +1.7 287,070 + ABID97_RS01420 0.67 +1.3 287,101 - ABID97_RS01420 0.70 +1.8 287,286 - ABID97_RS01420 0.84 +1.6 287,301 + ABID97_RS01420 0.86 +0.2 287,302 - ABID97_RS01420 0.86 +1.6 287,302 - ABID97_RS01420 0.86 +1.3 287,302 - ABID97_RS01420 0.86 +1.9 287,468 + +1.0 287,496 + -0.3 287,497 - -1.0 287,552 + +0.2 287,553 - -1.1 287,553 - -1.0 287,555 + +0.1 287,556 - -1.8 287,556 - -1.1 287,556 - -0.5 288,034 + ABID97_RS01425 0.18 -0.6 288,035 - ABID97_RS01425 0.18 -0.7 288,275 + ABID97_RS01425 0.28 -0.0 288,350 - ABID97_RS01425 0.31 -0.2 288,350 - ABID97_RS01425 0.31 -0.1
Or see this region's nucleotide sequence