Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01375 and ABID97_RS01380 are separated by 235 nucleotides ABID97_RS01380 and ABID97_RS01385 are separated by 113 nucleotides
ABID97_RS01375: ABID97_RS01375 - ABC transporter substrate-binding protein, at 278,052 to 279,200
_RS01375
ABID97_RS01380: ABID97_RS01380 - LysR substrate-binding domain-containing protein, at 279,436 to 280,383
_RS01380
ABID97_RS01385: ABID97_RS01385 - thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha, at 280,497 to 281,522
_RS01385
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 278.521 kb on + strand, within ABID97_RS01375 at 278.522 kb on - strand, within ABID97_RS01375 at 278.522 kb on - strand, within ABID97_RS01375 at 278.536 kb on + strand, within ABID97_RS01375 at 278.536 kb on + strand, within ABID97_RS01375 at 278.537 kb on - strand, within ABID97_RS01375 at 278.537 kb on - strand, within ABID97_RS01375 at 278.606 kb on - strand, within ABID97_RS01375 at 278.611 kb on + strand, within ABID97_RS01375 at 278.612 kb on - strand, within ABID97_RS01375 at 278.791 kb on + strand, within ABID97_RS01375 at 278.792 kb on - strand, within ABID97_RS01375 at 278.792 kb on - strand, within ABID97_RS01375 at 278.792 kb on - strand, within ABID97_RS01375 at 278.839 kb on + strand, within ABID97_RS01375 at 278.839 kb on + strand, within ABID97_RS01375 at 278.839 kb on + strand, within ABID97_RS01375 at 278.839 kb on + strand, within ABID97_RS01375 at 278.840 kb on - strand, within ABID97_RS01375 at 279.312 kb on - strand at 279.420 kb on + strand at 279.455 kb on - strand at 280.169 kb on - strand, within ABID97_RS01380 at 280.169 kb on - strand, within ABID97_RS01380 at 280.223 kb on - strand, within ABID97_RS01380 at 280.315 kb on + strand at 280.420 kb on + strand at 280.420 kb on + strand at 280.421 kb on - strand at 280.611 kb on + strand, within ABID97_RS01385 at 280.752 kb on - strand, within ABID97_RS01385 at 280.752 kb on - strand, within ABID97_RS01385 at 281.256 kb on + strand, within ABID97_RS01385 at 281.256 kb on + strand, within ABID97_RS01385 at 281.257 kb on - strand, within ABID97_RS01385 at 281.296 kb on - strand, within ABID97_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 278,521 + ABID97_RS01375 0.41 +0.6 278,522 - ABID97_RS01375 0.41 +0.7 278,522 - ABID97_RS01375 0.41 -0.5 278,536 + ABID97_RS01375 0.42 +0.8 278,536 + ABID97_RS01375 0.42 +0.2 278,537 - ABID97_RS01375 0.42 -0.7 278,537 - ABID97_RS01375 0.42 +0.0 278,606 - ABID97_RS01375 0.48 -0.2 278,611 + ABID97_RS01375 0.49 +0.2 278,612 - ABID97_RS01375 0.49 -0.5 278,791 + ABID97_RS01375 0.64 -0.3 278,792 - ABID97_RS01375 0.64 -1.8 278,792 - ABID97_RS01375 0.64 +0.1 278,792 - ABID97_RS01375 0.64 +2.3 278,839 + ABID97_RS01375 0.68 -0.5 278,839 + ABID97_RS01375 0.68 -1.6 278,839 + ABID97_RS01375 0.68 +1.7 278,839 + ABID97_RS01375 0.68 -0.2 278,840 - ABID97_RS01375 0.69 -2.2 279,312 - +0.4 279,420 + +0.7 279,455 - +1.3 280,169 - ABID97_RS01380 0.77 -0.8 280,169 - ABID97_RS01380 0.77 -1.1 280,223 - ABID97_RS01380 0.83 -1.2 280,315 + -0.2 280,420 + +0.1 280,420 + +0.9 280,421 - -0.0 280,611 + ABID97_RS01385 0.11 -0.3 280,752 - ABID97_RS01385 0.25 -0.4 280,752 - ABID97_RS01385 0.25 +0.5 281,256 + ABID97_RS01385 0.74 +0.1 281,256 + ABID97_RS01385 0.74 +2.9 281,257 - ABID97_RS01385 0.74 -0.3 281,296 - ABID97_RS01385 0.78 +0.5
Or see this region's nucleotide sequence