Strain Fitness in Escherichia coli BW25113 around b2930

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyggC and yggD overlap by 4 nucleotidesyggD and yggF are separated by 21 nucleotidesyggF and yggP overlap by 4 nucleotides b2928: yggC - hypothetical protein (NCBI), at 3,071,998 to 3,072,711 yggC b2929: yggD - predicted DNA-binding transcriptional regulator (NCBI), at 3,072,708 to 3,073,217 yggD b2930: yggF - predicted hexoseP phosphatase (NCBI), at 3,073,239 to 3,074,204 yggF b4465: yggP - predicted dehydrogenase (NCBI), at 3,074,201 to 3,075,478 yggP Position (kb) 3073 3074 3075Strain fitness (log2 ratio) -2 -1 0 1 2at 3072.240 kb on - strand, within yggCat 3072.240 kb on - strand, within yggCat 3072.340 kb on + strand, within yggCat 3072.340 kb on + strand, within yggCat 3072.367 kb on - strand, within yggCat 3072.434 kb on - strand, within yggCat 3072.495 kb on + strand, within yggCat 3072.495 kb on + strand, within yggCat 3072.551 kb on + strand, within yggCat 3072.551 kb on + strand, within yggCat 3072.578 kb on + strand, within yggCat 3072.612 kb on - strand, within yggCat 3072.671 kb on + strandat 3072.672 kb on - strandat 3072.695 kb on - strandat 3072.695 kb on - strandat 3072.827 kb on + strand, within yggDat 3072.856 kb on + strand, within yggDat 3072.939 kb on - strand, within yggDat 3072.969 kb on - strand, within yggDat 3073.062 kb on + strand, within yggDat 3073.062 kb on + strand, within yggDat 3073.174 kb on + strandat 3073.204 kb on - strandat 3073.204 kb on - strandat 3073.263 kb on - strandat 3073.272 kb on - strandat 3073.322 kb on + strandat 3073.328 kb on - strandat 3073.330 kb on - strandat 3073.414 kb on - strand, within yggFat 3073.518 kb on + strand, within yggFat 3073.518 kb on + strand, within yggFat 3073.714 kb on + strand, within yggFat 3073.729 kb on + strand, within yggFat 3073.729 kb on + strand, within yggFat 3073.922 kb on - strand, within yggFat 3073.922 kb on - strand, within yggFat 3074.056 kb on - strand, within yggFat 3074.081 kb on - strand, within yggFat 3074.204 kb on - strandat 3074.204 kb on - strandat 3074.223 kb on - strandat 3074.260 kb on + strandat 3074.322 kb on + strandat 3074.370 kb on - strand, within yggPat 3074.370 kb on - strand, within yggPat 3074.436 kb on + strand, within yggPat 3074.436 kb on + strand, within yggPat 3074.466 kb on + strand, within yggPat 3074.517 kb on - strand, within yggPat 3074.768 kb on - strand, within yggPat 3074.776 kb on + strand, within yggPat 3074.819 kb on + strand, within yggPat 3074.820 kb on + strand, within yggPat 3074.820 kb on + strand, within yggPat 3074.840 kb on + strand, within yggPat 3074.883 kb on - strand, within yggPat 3074.893 kb on - strand, within yggPat 3074.908 kb on + strand, within yggPat 3074.908 kb on + strand, within yggPat 3074.908 kb on + strand, within yggPat 3074.923 kb on + strand, within yggPat 3074.931 kb on - strand, within yggPat 3074.931 kb on - strand, within yggPat 3074.941 kb on - strand, within yggPat 3074.941 kb on - strand, within yggPat 3074.958 kb on + strand, within yggPat 3074.961 kb on - strand, within yggPat 3074.975 kb on - strand, within yggPat 3074.979 kb on - strand, within yggPat 3075.013 kb on + strand, within yggPat 3075.016 kb on - strand, within yggPat 3075.022 kb on + strand, within yggPat 3075.022 kb on + strand, within yggPat 3075.022 kb on + strand, within yggPat 3075.024 kb on + strand, within yggPat 3075.024 kb on + strand, within yggPat 3075.024 kb on + strand, within yggPat 3075.025 kb on + strand, within yggPat 3075.030 kb on - strand, within yggPat 3075.033 kb on + strand, within yggPat 3075.034 kb on + strand, within yggPat 3075.034 kb on + strand, within yggPat 3075.034 kb on + strand, within yggPat 3075.034 kb on + strand, within yggPat 3075.034 kb on + strand, within yggPat 3075.035 kb on + strand, within yggPat 3075.039 kb on + strand, within yggPat 3075.042 kb on - strand, within yggPat 3075.042 kb on - strand, within yggPat 3075.074 kb on + strand, within yggPat 3075.074 kb on + strand, within yggPat 3075.074 kb on + strand, within yggPat 3075.077 kb on + strand, within yggPat 3075.077 kb on + strand, within yggPat 3075.126 kb on + strand, within yggPat 3075.168 kb on + strand, within yggPat 3075.179 kb on + strand, within yggPat 3075.179 kb on + strand, within yggPat 3075.187 kb on - strand, within yggP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
3,072,240 - yggC b2928 0.34 +0.7
3,072,240 - yggC b2928 0.34 -0.2
3,072,340 + yggC b2928 0.48 +0.4
3,072,340 + yggC b2928 0.48 -0.5
3,072,367 - yggC b2928 0.52 -0.0
3,072,434 - yggC b2928 0.61 +0.4
3,072,495 + yggC b2928 0.70 +0.2
3,072,495 + yggC b2928 0.70 -0.4
3,072,551 + yggC b2928 0.77 -0.6
3,072,551 + yggC b2928 0.77 -0.3
3,072,578 + yggC b2928 0.81 +0.0
3,072,612 - yggC b2928 0.86 +0.2
3,072,671 + -0.2
3,072,672 - +0.1
3,072,695 - -1.5
3,072,695 - -0.6
3,072,827 + yggD b2929 0.23 -0.4
3,072,856 + yggD b2929 0.29 +0.3
3,072,939 - yggD b2929 0.45 -0.5
3,072,969 - yggD b2929 0.51 +0.2
3,073,062 + yggD b2929 0.69 +1.0
3,073,062 + yggD b2929 0.69 +0.6
3,073,174 + +0.1
3,073,204 - +0.0
3,073,204 - -0.9
3,073,263 - -0.1
3,073,272 - +0.9
3,073,322 + -0.7
3,073,328 - +0.1
3,073,330 - -0.1
3,073,414 - yggF b2930 0.18 +0.8
3,073,518 + yggF b2930 0.29 -0.2
3,073,518 + yggF b2930 0.29 +1.8
3,073,714 + yggF b2930 0.49 +0.5
3,073,729 + yggF b2930 0.51 +0.3
3,073,729 + yggF b2930 0.51 +0.7
3,073,922 - yggF b2930 0.71 +0.0
3,073,922 - yggF b2930 0.71 +0.1
3,074,056 - yggF b2930 0.85 -0.8
3,074,081 - yggF b2930 0.87 +0.4
3,074,204 - -0.5
3,074,204 - -0.8
3,074,223 - +0.5
3,074,260 + -0.3
3,074,322 + -0.0
3,074,370 - yggP b4465 0.13 -0.3
3,074,370 - yggP b4465 0.13 -0.8
3,074,436 + yggP b4465 0.18 +0.1
3,074,436 + yggP b4465 0.18 +0.1
3,074,466 + yggP b4465 0.21 -1.2
3,074,517 - yggP b4465 0.25 +0.5
3,074,768 - yggP b4465 0.44 +1.4
3,074,776 + yggP b4465 0.45 -0.2
3,074,819 + yggP b4465 0.48 -0.7
3,074,820 + yggP b4465 0.48 -0.4
3,074,820 + yggP b4465 0.48 -0.4
3,074,840 + yggP b4465 0.50 +0.3
3,074,883 - yggP b4465 0.53 +0.7
3,074,893 - yggP b4465 0.54 +1.3
3,074,908 + yggP b4465 0.55 -0.1
3,074,908 + yggP b4465 0.55 -0.3
3,074,908 + yggP b4465 0.55 +0.5
3,074,923 + yggP b4465 0.56 -0.2
3,074,931 - yggP b4465 0.57 -0.5
3,074,931 - yggP b4465 0.57 -0.4
3,074,941 - yggP b4465 0.58 -0.0
3,074,941 - yggP b4465 0.58 +0.6
3,074,958 + yggP b4465 0.59 -0.1
3,074,961 - yggP b4465 0.59 -0.1
3,074,975 - yggP b4465 0.61 +0.2
3,074,979 - yggP b4465 0.61 +0.8
3,075,013 + yggP b4465 0.64 -1.1
3,075,016 - yggP b4465 0.64 -0.2
3,075,022 + yggP b4465 0.64 -0.2
3,075,022 + yggP b4465 0.64 -0.2
3,075,022 + yggP b4465 0.64 -0.4
3,075,024 + yggP b4465 0.64 -0.2
3,075,024 + yggP b4465 0.64 -0.7
3,075,024 + yggP b4465 0.64 +0.8
3,075,025 + yggP b4465 0.64 +0.0
3,075,030 - yggP b4465 0.65 -0.6
3,075,033 + yggP b4465 0.65 -0.3
3,075,034 + yggP b4465 0.65 -0.5
3,075,034 + yggP b4465 0.65 +1.0
3,075,034 + yggP b4465 0.65 +0.1
3,075,034 + yggP b4465 0.65 +0.2
3,075,034 + yggP b4465 0.65 +0.4
3,075,035 + yggP b4465 0.65 +0.4
3,075,039 + yggP b4465 0.66 +0.4
3,075,042 - yggP b4465 0.66 +0.6
3,075,042 - yggP b4465 0.66 +0.0
3,075,074 + yggP b4465 0.68 -0.6
3,075,074 + yggP b4465 0.68 -0.0
3,075,074 + yggP b4465 0.68 +0.2
3,075,077 + yggP b4465 0.69 +2.5
3,075,077 + yggP b4465 0.69 +0.2
3,075,126 + yggP b4465 0.72 +0.9
3,075,168 + yggP b4465 0.76 -1.9
3,075,179 + yggP b4465 0.77 -0.7
3,075,179 + yggP b4465 0.77 +0.1
3,075,187 - yggP b4465 0.77 +0.6

Or see this region's nucleotide sequence