Strain Fitness in Escherichia coli BW25113 around b1615

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgA and uidC are separated by 225 nucleotidesuidC and uidB are separated by 38 nucleotides b1614: ydgA - hypothetical protein (NCBI), at 1,687,876 to 1,689,384 ydgA b1615: uidC - membrane-associated protein (VIMSS), at 1,689,610 to 1,690,875 uidC b1616: uidB - glucuronide transporter (NCBI), at 1,690,914 to 1,692,287 uidB Position (kb) 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1at 1688.718 kb on - strand, within ydgAat 1688.786 kb on - strand, within ydgAat 1688.901 kb on + strand, within ydgAat 1688.940 kb on + strand, within ydgAat 1689.240 kb on + strandat 1689.593 kb on - strandat 1689.678 kb on - strandat 1689.678 kb on - strandat 1689.759 kb on + strand, within uidCat 1689.777 kb on - strand, within uidCat 1689.777 kb on - strand, within uidCat 1690.093 kb on - strand, within uidCat 1690.093 kb on - strand, within uidCat 1690.166 kb on + strand, within uidCat 1690.208 kb on + strand, within uidCat 1690.209 kb on + strand, within uidCat 1690.291 kb on + strand, within uidCat 1690.308 kb on + strand, within uidCat 1690.368 kb on + strand, within uidCat 1690.702 kb on - strand, within uidCat 1691.059 kb on - strand, within uidBat 1691.059 kb on - strand, within uidBat 1691.059 kb on - strand, within uidBat 1691.084 kb on - strand, within uidBat 1691.152 kb on - strand, within uidBat 1691.197 kb on - strand, within uidBat 1691.197 kb on - strand, within uidBat 1691.207 kb on - strand, within uidBat 1691.244 kb on - strand, within uidBat 1691.458 kb on + strand, within uidBat 1691.458 kb on + strand, within uidBat 1691.486 kb on + strand, within uidBat 1691.489 kb on - strand, within uidBat 1691.489 kb on - strand, within uidBat 1691.699 kb on - strand, within uidBat 1691.699 kb on - strand, within uidBat 1691.787 kb on - strand, within uidBat 1691.793 kb on - strand, within uidBat 1691.867 kb on - strand, within uidB

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,688,718 - ydgA b1614 0.56 +0.1
1,688,786 - ydgA b1614 0.60 +0.5
1,688,901 + ydgA b1614 0.68 +0.0
1,688,940 + ydgA b1614 0.71 -0.1
1,689,240 + +0.5
1,689,593 - +0.3
1,689,678 - -1.2
1,689,678 - -0.6
1,689,759 + uidC b1615 0.12 -0.3
1,689,777 - uidC b1615 0.13 +0.0
1,689,777 - uidC b1615 0.13 +0.3
1,690,093 - uidC b1615 0.38 +1.0
1,690,093 - uidC b1615 0.38 -0.1
1,690,166 + uidC b1615 0.44 -0.2
1,690,208 + uidC b1615 0.47 -1.5
1,690,209 + uidC b1615 0.47 -0.2
1,690,291 + uidC b1615 0.54 +0.3
1,690,308 + uidC b1615 0.55 -0.2
1,690,368 + uidC b1615 0.60 +0.4
1,690,702 - uidC b1615 0.86 +0.0
1,691,059 - uidB b1616 0.11 +0.3
1,691,059 - uidB b1616 0.11 -0.8
1,691,059 - uidB b1616 0.11 +0.2
1,691,084 - uidB b1616 0.12 -0.3
1,691,152 - uidB b1616 0.17 +0.8
1,691,197 - uidB b1616 0.21 +1.2
1,691,197 - uidB b1616 0.21 +0.5
1,691,207 - uidB b1616 0.21 -0.0
1,691,244 - uidB b1616 0.24 +0.4
1,691,458 + uidB b1616 0.40 +0.6
1,691,458 + uidB b1616 0.40 +0.8
1,691,486 + uidB b1616 0.42 -1.8
1,691,489 - uidB b1616 0.42 -0.1
1,691,489 - uidB b1616 0.42 -0.5
1,691,699 - uidB b1616 0.57 +0.4
1,691,699 - uidB b1616 0.57 +0.3
1,691,787 - uidB b1616 0.64 +0.1
1,691,793 - uidB b1616 0.64 +0.2
1,691,867 - uidB b1616 0.69 -0.1

Or see this region's nucleotide sequence