Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19240

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19230 and PFLU_RS19235 are separated by 228 nucleotidesPFLU_RS19235 and PFLU_RS19240 are separated by 105 nucleotidesPFLU_RS19240 and PFLU_RS19245 are separated by 78 nucleotides PFLU_RS19230: PFLU_RS19230 - efflux transporter outer membrane subunit, at 4,347,533 to 4,348,951 _RS19230 PFLU_RS19235: PFLU_RS19235 - transposase, at 4,349,180 to 4,349,638 _RS19235 PFLU_RS19240: PFLU_RS19240 - Zn-dependent hydrolase, at 4,349,744 to 4,351,027 _RS19240 PFLU_RS19245: PFLU_RS19245 - NCS1 family nucleobase:cation symporter-1, at 4,351,106 to 4,352,593 _RS19245 Position (kb) 4349 4350 4351 4352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4348.796 kb on + strand, within PFLU_RS19230at 4348.796 kb on + strand, within PFLU_RS19230at 4348.796 kb on + strand, within PFLU_RS19230at 4348.796 kb on + strand, within PFLU_RS19230at 4348.796 kb on + strand, within PFLU_RS19230at 4348.817 kb on + strandat 4348.974 kb on + strandat 4348.975 kb on - strandat 4348.975 kb on - strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.037 kb on + strandat 4349.038 kb on - strandat 4349.038 kb on - strandat 4349.038 kb on - strandat 4349.038 kb on - strandat 4349.038 kb on - strandat 4349.038 kb on - strandat 4349.190 kb on + strandat 4349.190 kb on + strandat 4349.239 kb on + strand, within PFLU_RS19235at 4349.239 kb on + strand, within PFLU_RS19235at 4349.239 kb on + strand, within PFLU_RS19235at 4349.239 kb on + strand, within PFLU_RS19235at 4349.240 kb on - strand, within PFLU_RS19235at 4349.240 kb on - strand, within PFLU_RS19235at 4349.240 kb on - strand, within PFLU_RS19235at 4349.240 kb on - strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.243 kb on + strand, within PFLU_RS19235at 4349.244 kb on - strand, within PFLU_RS19235at 4349.244 kb on - strand, within PFLU_RS19235at 4349.244 kb on - strand, within PFLU_RS19235at 4349.395 kb on + strand, within PFLU_RS19235at 4349.395 kb on + strand, within PFLU_RS19235at 4349.439 kb on + strand, within PFLU_RS19235at 4349.439 kb on + strand, within PFLU_RS19235at 4349.440 kb on - strand, within PFLU_RS19235at 4349.541 kb on + strand, within PFLU_RS19235at 4349.542 kb on - strand, within PFLU_RS19235at 4349.542 kb on - strand, within PFLU_RS19235at 4349.542 kb on - strand, within PFLU_RS19235at 4349.542 kb on - strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.558 kb on + strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.559 kb on - strand, within PFLU_RS19235at 4349.562 kb on + strand, within PFLU_RS19235at 4349.562 kb on + strand, within PFLU_RS19235at 4349.562 kb on + strand, within PFLU_RS19235at 4349.562 kb on + strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.563 kb on - strand, within PFLU_RS19235at 4349.609 kb on + strandat 4349.636 kb on + strandat 4349.636 kb on + strandat 4349.636 kb on + strandat 4349.637 kb on - strandat 4349.637 kb on - strandat 4349.637 kb on - strandat 4349.754 kb on - strandat 4349.801 kb on + strandat 4349.802 kb on - strandat 4349.802 kb on - strandat 4350.015 kb on + strand, within PFLU_RS19240at 4350.016 kb on - strand, within PFLU_RS19240at 4350.016 kb on - strand, within PFLU_RS19240at 4350.192 kb on + strand, within PFLU_RS19240at 4350.445 kb on - strand, within PFLU_RS19240at 4350.445 kb on - strand, within PFLU_RS19240at 4350.445 kb on - strand, within PFLU_RS19240at 4350.457 kb on + strand, within PFLU_RS19240at 4350.457 kb on + strand, within PFLU_RS19240at 4350.457 kb on + strand, within PFLU_RS19240at 4350.487 kb on - strand, within PFLU_RS19240at 4350.527 kb on + strand, within PFLU_RS19240at 4350.528 kb on - strand, within PFLU_RS19240at 4351.053 kb on - strandat 4351.054 kb on + strandat 4351.055 kb on - strandat 4351.120 kb on + strandat 4351.120 kb on + strandat 4351.121 kb on - strandat 4351.138 kb on + strandat 4351.138 kb on + strandat 4351.138 kb on + strandat 4351.162 kb on - strandat 4351.164 kb on + strandat 4351.165 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.204 kb on - strandat 4351.209 kb on + strandat 4351.209 kb on + strandat 4351.210 kb on - strandat 4351.210 kb on - strandat 4351.210 kb on - strandat 4351.359 kb on + strand, within PFLU_RS19245at 4351.359 kb on + strand, within PFLU_RS19245at 4351.359 kb on + strand, within PFLU_RS19245at 4351.359 kb on + strand, within PFLU_RS19245at 4351.359 kb on + strand, within PFLU_RS19245at 4351.360 kb on - strand, within PFLU_RS19245at 4351.360 kb on - strand, within PFLU_RS19245at 4351.405 kb on - strand, within PFLU_RS19245at 4351.425 kb on + strand, within PFLU_RS19245at 4351.663 kb on + strand, within PFLU_RS19245at 4351.663 kb on + strand, within PFLU_RS19245at 4351.663 kb on + strand, within PFLU_RS19245at 4351.663 kb on + strand, within PFLU_RS19245at 4351.835 kb on - strand, within PFLU_RS19245at 4351.890 kb on + strand, within PFLU_RS19245at 4351.891 kb on - strand, within PFLU_RS19245

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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4,348,796 + PFLU_RS19230 0.89 +0.6
4,348,796 + PFLU_RS19230 0.89 +1.9
4,348,796 + PFLU_RS19230 0.89 +1.2
4,348,796 + PFLU_RS19230 0.89 +1.6
4,348,796 + PFLU_RS19230 0.89 -1.8
4,348,817 + +1.8
4,348,974 + -0.0
4,348,975 - -1.0
4,348,975 - -0.6
4,349,037 + -0.4
4,349,037 + -1.8
4,349,037 + -1.8
4,349,037 + +0.6
4,349,037 + +1.2
4,349,037 + +1.3
4,349,037 + -0.7
4,349,037 + +0.2
4,349,037 + -1.3
4,349,038 - -0.1
4,349,038 - -1.1
4,349,038 - +0.7
4,349,038 - +1.4
4,349,038 - +1.1
4,349,038 - +0.6
4,349,190 + -0.9
4,349,190 + -1.2
4,349,239 + PFLU_RS19235 0.13 +0.2
4,349,239 + PFLU_RS19235 0.13 +2.0
4,349,239 + PFLU_RS19235 0.13 +1.3
4,349,239 + PFLU_RS19235 0.13 +0.2
4,349,240 - PFLU_RS19235 0.13 -2.9
4,349,240 - PFLU_RS19235 0.13 +1.9
4,349,240 - PFLU_RS19235 0.13 -0.8
4,349,240 - PFLU_RS19235 0.13 -0.4
4,349,243 + PFLU_RS19235 0.14 +0.2
4,349,243 + PFLU_RS19235 0.14 +0.8
4,349,243 + PFLU_RS19235 0.14 -0.9
4,349,243 + PFLU_RS19235 0.14 -0.1
4,349,243 + PFLU_RS19235 0.14 -0.7
4,349,243 + PFLU_RS19235 0.14 -0.4
4,349,243 + PFLU_RS19235 0.14 -0.4
4,349,244 - PFLU_RS19235 0.14 +1.2
4,349,244 - PFLU_RS19235 0.14 -2.5
4,349,244 - PFLU_RS19235 0.14 +0.6
4,349,395 + PFLU_RS19235 0.47 -0.9
4,349,395 + PFLU_RS19235 0.47 +0.6
4,349,439 + PFLU_RS19235 0.56 +0.4
4,349,439 + PFLU_RS19235 0.56 +1.8
4,349,440 - PFLU_RS19235 0.57 +1.0
4,349,541 + PFLU_RS19235 0.79 +0.5
4,349,542 - PFLU_RS19235 0.79 +2.3
4,349,542 - PFLU_RS19235 0.79 +0.2
4,349,542 - PFLU_RS19235 0.79 +0.8
4,349,542 - PFLU_RS19235 0.79 -0.3
4,349,558 + PFLU_RS19235 0.82 +1.4
4,349,558 + PFLU_RS19235 0.82 -1.8
4,349,558 + PFLU_RS19235 0.82 +0.1
4,349,558 + PFLU_RS19235 0.82 +2.1
4,349,558 + PFLU_RS19235 0.82 -0.3
4,349,558 + PFLU_RS19235 0.82 -1.0
4,349,558 + PFLU_RS19235 0.82 +0.6
4,349,558 + PFLU_RS19235 0.82 -2.1
4,349,559 - PFLU_RS19235 0.83 +0.8
4,349,559 - PFLU_RS19235 0.83 +0.5
4,349,559 - PFLU_RS19235 0.83 +0.9
4,349,559 - PFLU_RS19235 0.83 -1.0
4,349,559 - PFLU_RS19235 0.83 -0.1
4,349,559 - PFLU_RS19235 0.83 -0.1
4,349,559 - PFLU_RS19235 0.83 -0.4
4,349,559 - PFLU_RS19235 0.83 -1.5
4,349,559 - PFLU_RS19235 0.83 -0.9
4,349,559 - PFLU_RS19235 0.83 +0.0
4,349,559 - PFLU_RS19235 0.83 +0.7
4,349,559 - PFLU_RS19235 0.83 -0.4
4,349,559 - PFLU_RS19235 0.83 +0.4
4,349,562 + PFLU_RS19235 0.83 +0.2
4,349,562 + PFLU_RS19235 0.83 -0.3
4,349,562 + PFLU_RS19235 0.83 +0.1
4,349,562 + PFLU_RS19235 0.83 +2.1
4,349,563 - PFLU_RS19235 0.83 -0.6
4,349,563 - PFLU_RS19235 0.83 +0.9
4,349,563 - PFLU_RS19235 0.83 -0.0
4,349,563 - PFLU_RS19235 0.83 +0.5
4,349,563 - PFLU_RS19235 0.83 -1.5
4,349,563 - PFLU_RS19235 0.83 +1.2
4,349,563 - PFLU_RS19235 0.83 +0.7
4,349,563 - PFLU_RS19235 0.83 -0.0
4,349,563 - PFLU_RS19235 0.83 +0.6
4,349,563 - PFLU_RS19235 0.83 -0.8
4,349,609 + +1.4
4,349,636 + +1.1
4,349,636 + +0.4
4,349,636 + +0.3
4,349,637 - -0.9
4,349,637 - +0.2
4,349,637 - +1.0
4,349,754 - -1.7
4,349,801 + +1.3
4,349,802 - +1.7
4,349,802 - -0.9
4,350,015 + PFLU_RS19240 0.21 -0.6
4,350,016 - PFLU_RS19240 0.21 +0.1
4,350,016 - PFLU_RS19240 0.21 -1.9
4,350,192 + PFLU_RS19240 0.35 -1.6
4,350,445 - PFLU_RS19240 0.55 +0.4
4,350,445 - PFLU_RS19240 0.55 -3.2
4,350,445 - PFLU_RS19240 0.55 -1.3
4,350,457 + PFLU_RS19240 0.56 +1.2
4,350,457 + PFLU_RS19240 0.56 -0.9
4,350,457 + PFLU_RS19240 0.56 +0.4
4,350,487 - PFLU_RS19240 0.58 +0.6
4,350,527 + PFLU_RS19240 0.61 +0.5
4,350,528 - PFLU_RS19240 0.61 -0.4
4,351,053 - +1.0
4,351,054 + +2.2
4,351,055 - -0.2
4,351,120 + -0.5
4,351,120 + -2.3
4,351,121 - +0.5
4,351,138 + -2.5
4,351,138 + +2.0
4,351,138 + -0.0
4,351,162 - -1.5
4,351,164 + -1.0
4,351,165 - +0.3
4,351,204 - -0.4
4,351,204 - -1.3
4,351,204 - +0.4
4,351,204 - +0.0
4,351,204 - +0.7
4,351,204 - -0.8
4,351,204 - -1.3
4,351,209 + -3.5
4,351,209 + +0.1
4,351,210 - +1.3
4,351,210 - +0.0
4,351,210 - -0.2
4,351,359 + PFLU_RS19245 0.17 -1.6
4,351,359 + PFLU_RS19245 0.17 +0.3
4,351,359 + PFLU_RS19245 0.17 -0.4
4,351,359 + PFLU_RS19245 0.17 +0.4
4,351,359 + PFLU_RS19245 0.17 -1.2
4,351,360 - PFLU_RS19245 0.17 -0.0
4,351,360 - PFLU_RS19245 0.17 -0.8
4,351,405 - PFLU_RS19245 0.20 -0.7
4,351,425 + PFLU_RS19245 0.21 +0.2
4,351,663 + PFLU_RS19245 0.37 +0.4
4,351,663 + PFLU_RS19245 0.37 -0.3
4,351,663 + PFLU_RS19245 0.37 +0.7
4,351,663 + PFLU_RS19245 0.37 +0.9
4,351,835 - PFLU_RS19245 0.49 -0.1
4,351,890 + PFLU_RS19245 0.53 +0.8
4,351,891 - PFLU_RS19245 0.53 +2.1

Or see this region's nucleotide sequence