Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06725

Experiment: L-Arabinose (C); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS06720 and PFLU_RS06725 are separated by 264 nucleotidesPFLU_RS06725 and PFLU_RS06730 overlap by 1 nucleotidesPFLU_RS06730 and PFLU_RS06735 overlap by 1 nucleotides PFLU_RS06720: PFLU_RS06720 - MFS transporter, at 1,502,018 to 1,503,358 _RS06720 PFLU_RS06725: PFLU_RS06725 - CoA transferase subunit A, at 1,503,623 to 1,504,480 _RS06725 PFLU_RS06730: PFLU_RS06730 - CoA-transferase subunit beta, at 1,504,480 to 1,505,259 _RS06730 PFLU_RS06735: PFLU_RS06735 - 3-oxoadipyl-CoA thiolase, at 1,505,259 to 1,506,458 _RS06735 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1502.640 kb on - strand, within PFLU_RS06720at 1502.766 kb on + strand, within PFLU_RS06720at 1502.767 kb on - strand, within PFLU_RS06720at 1502.767 kb on - strand, within PFLU_RS06720at 1502.767 kb on - strand, within PFLU_RS06720at 1502.789 kb on - strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.792 kb on + strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.793 kb on - strand, within PFLU_RS06720at 1502.825 kb on + strand, within PFLU_RS06720at 1502.825 kb on + strand, within PFLU_RS06720at 1502.825 kb on + strand, within PFLU_RS06720at 1502.825 kb on + strand, within PFLU_RS06720at 1502.825 kb on + strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.826 kb on - strand, within PFLU_RS06720at 1502.850 kb on - strand, within PFLU_RS06720at 1502.918 kb on - strand, within PFLU_RS06720at 1502.918 kb on - strand, within PFLU_RS06720at 1503.014 kb on + strand, within PFLU_RS06720at 1503.014 kb on + strand, within PFLU_RS06720at 1503.014 kb on + strand, within PFLU_RS06720at 1503.014 kb on + strand, within PFLU_RS06720at 1503.015 kb on - strand, within PFLU_RS06720at 1503.015 kb on - strand, within PFLU_RS06720at 1503.015 kb on - strand, within PFLU_RS06720at 1503.039 kb on - strand, within PFLU_RS06720at 1503.152 kb on + strand, within PFLU_RS06720at 1503.353 kb on - strandat 1503.353 kb on - strandat 1503.482 kb on + strandat 1503.482 kb on + strandat 1503.482 kb on + strandat 1503.483 kb on - strandat 1503.483 kb on - strandat 1503.483 kb on - strandat 1503.485 kb on + strandat 1503.486 kb on - strandat 1503.486 kb on - strandat 1503.486 kb on - strandat 1503.486 kb on - strandat 1503.489 kb on + strandat 1503.490 kb on - strandat 1503.558 kb on + strandat 1503.558 kb on + strandat 1503.558 kb on + strandat 1503.559 kb on - strandat 1503.700 kb on + strandat 1503.715 kb on + strand, within PFLU_RS06725at 1503.736 kb on - strand, within PFLU_RS06725at 1503.772 kb on + strand, within PFLU_RS06725at 1503.772 kb on + strand, within PFLU_RS06725at 1503.772 kb on + strand, within PFLU_RS06725at 1503.773 kb on - strand, within PFLU_RS06725at 1503.773 kb on - strand, within PFLU_RS06725at 1503.791 kb on + strand, within PFLU_RS06725at 1503.791 kb on + strand, within PFLU_RS06725at 1503.792 kb on - strand, within PFLU_RS06725at 1503.792 kb on - strand, within PFLU_RS06725at 1503.792 kb on - strand, within PFLU_RS06725at 1503.792 kb on - strand, within PFLU_RS06725at 1503.953 kb on + strand, within PFLU_RS06725at 1503.953 kb on + strand, within PFLU_RS06725at 1503.953 kb on + strand, within PFLU_RS06725at 1503.953 kb on + strand, within PFLU_RS06725at 1503.953 kb on + strand, within PFLU_RS06725at 1503.954 kb on - strand, within PFLU_RS06725at 1503.954 kb on - strand, within PFLU_RS06725at 1504.138 kb on + strand, within PFLU_RS06725at 1504.138 kb on + strand, within PFLU_RS06725at 1504.139 kb on - strand, within PFLU_RS06725at 1504.293 kb on + strand, within PFLU_RS06725at 1504.316 kb on + strand, within PFLU_RS06725at 1504.316 kb on + strand, within PFLU_RS06725at 1504.316 kb on + strand, within PFLU_RS06725at 1504.329 kb on - strand, within PFLU_RS06725at 1504.329 kb on - strand, within PFLU_RS06725at 1504.330 kb on + strand, within PFLU_RS06725at 1504.352 kb on + strand, within PFLU_RS06725at 1504.353 kb on - strand, within PFLU_RS06725at 1504.353 kb on - strand, within PFLU_RS06725at 1504.353 kb on - strand, within PFLU_RS06725at 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.412 kb on + strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.413 kb on - strandat 1504.486 kb on + strandat 1504.486 kb on + strandat 1504.486 kb on + strandat 1504.486 kb on + strandat 1504.487 kb on - strandat 1504.616 kb on + strand, within PFLU_RS06730at 1504.617 kb on - strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.624 kb on + strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.625 kb on - strand, within PFLU_RS06730at 1504.709 kb on + strand, within PFLU_RS06730at 1504.709 kb on + strand, within PFLU_RS06730at 1504.829 kb on - strand, within PFLU_RS06730at 1504.829 kb on - strand, within PFLU_RS06730at 1504.829 kb on - strand, within PFLU_RS06730at 1504.990 kb on - strand, within PFLU_RS06730at 1504.990 kb on - strand, within PFLU_RS06730at 1504.990 kb on - strand, within PFLU_RS06730at 1505.029 kb on - strand, within PFLU_RS06730at 1505.029 kb on - strand, within PFLU_RS06730at 1505.029 kb on - strand, within PFLU_RS06730at 1505.273 kb on + strandat 1505.273 kb on + strandat 1505.273 kb on + strandat 1505.274 kb on - strandat 1505.274 kb on - strandat 1505.274 kb on - strandat 1505.291 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
remove
1,502,640 - PFLU_RS06720 0.46 +1.7
1,502,766 + PFLU_RS06720 0.56 -0.4
1,502,767 - PFLU_RS06720 0.56 +1.5
1,502,767 - PFLU_RS06720 0.56 -0.0
1,502,767 - PFLU_RS06720 0.56 +1.9
1,502,789 - PFLU_RS06720 0.57 +0.9
1,502,792 + PFLU_RS06720 0.58 -0.9
1,502,792 + PFLU_RS06720 0.58 +1.2
1,502,792 + PFLU_RS06720 0.58 -0.2
1,502,792 + PFLU_RS06720 0.58 +0.3
1,502,792 + PFLU_RS06720 0.58 +1.1
1,502,792 + PFLU_RS06720 0.58 +0.3
1,502,792 + PFLU_RS06720 0.58 +1.1
1,502,792 + PFLU_RS06720 0.58 -1.1
1,502,792 + PFLU_RS06720 0.58 +0.5
1,502,792 + PFLU_RS06720 0.58 +1.0
1,502,792 + PFLU_RS06720 0.58 +1.5
1,502,792 + PFLU_RS06720 0.58 -1.4
1,502,792 + PFLU_RS06720 0.58 +0.8
1,502,792 + PFLU_RS06720 0.58 -1.4
1,502,792 + PFLU_RS06720 0.58 +0.8
1,502,792 + PFLU_RS06720 0.58 -2.7
1,502,793 - PFLU_RS06720 0.58 +1.1
1,502,793 - PFLU_RS06720 0.58 +0.7
1,502,793 - PFLU_RS06720 0.58 +0.7
1,502,793 - PFLU_RS06720 0.58 +1.9
1,502,793 - PFLU_RS06720 0.58 -0.7
1,502,793 - PFLU_RS06720 0.58 -1.1
1,502,793 - PFLU_RS06720 0.58 +2.0
1,502,793 - PFLU_RS06720 0.58 -0.9
1,502,793 - PFLU_RS06720 0.58 -0.6
1,502,793 - PFLU_RS06720 0.58 +0.8
1,502,793 - PFLU_RS06720 0.58 -2.1
1,502,793 - PFLU_RS06720 0.58 -1.2
1,502,825 + PFLU_RS06720 0.60 -0.1
1,502,825 + PFLU_RS06720 0.60 -1.2
1,502,825 + PFLU_RS06720 0.60 +1.5
1,502,825 + PFLU_RS06720 0.60 -0.5
1,502,825 + PFLU_RS06720 0.60 -1.4
1,502,826 - PFLU_RS06720 0.60 +0.5
1,502,826 - PFLU_RS06720 0.60 -0.4
1,502,826 - PFLU_RS06720 0.60 -1.7
1,502,826 - PFLU_RS06720 0.60 +0.3
1,502,826 - PFLU_RS06720 0.60 +0.2
1,502,826 - PFLU_RS06720 0.60 -1.5
1,502,826 - PFLU_RS06720 0.60 +0.8
1,502,826 - PFLU_RS06720 0.60 +1.3
1,502,826 - PFLU_RS06720 0.60 -0.1
1,502,850 - PFLU_RS06720 0.62 -1.2
1,502,918 - PFLU_RS06720 0.67 -1.1
1,502,918 - PFLU_RS06720 0.67 +0.1
1,503,014 + PFLU_RS06720 0.74 -0.9
1,503,014 + PFLU_RS06720 0.74 +1.0
1,503,014 + PFLU_RS06720 0.74 -1.4
1,503,014 + PFLU_RS06720 0.74 +0.7
1,503,015 - PFLU_RS06720 0.74 +0.5
1,503,015 - PFLU_RS06720 0.74 -1.7
1,503,015 - PFLU_RS06720 0.74 +1.3
1,503,039 - PFLU_RS06720 0.76 +1.6
1,503,152 + PFLU_RS06720 0.85 +0.3
1,503,353 - -0.1
1,503,353 - +0.2
1,503,482 + -2.4
1,503,482 + -1.7
1,503,482 + -0.1
1,503,483 - +0.2
1,503,483 - +0.7
1,503,483 - +1.1
1,503,485 + +0.8
1,503,486 - -0.8
1,503,486 - -0.8
1,503,486 - -0.8
1,503,486 - -0.1
1,503,489 + -0.4
1,503,490 - -0.1
1,503,558 + +0.3
1,503,558 + +0.2
1,503,558 + -1.3
1,503,559 - -1.9
1,503,700 + +0.3
1,503,715 + PFLU_RS06725 0.11 -0.3
1,503,736 - PFLU_RS06725 0.13 +0.9
1,503,772 + PFLU_RS06725 0.17 -0.0
1,503,772 + PFLU_RS06725 0.17 +1.0
1,503,772 + PFLU_RS06725 0.17 +1.7
1,503,773 - PFLU_RS06725 0.17 -3.6
1,503,773 - PFLU_RS06725 0.17 +2.5
1,503,791 + PFLU_RS06725 0.20 -0.4
1,503,791 + PFLU_RS06725 0.20 -2.1
1,503,792 - PFLU_RS06725 0.20 -0.4
1,503,792 - PFLU_RS06725 0.20 -0.3
1,503,792 - PFLU_RS06725 0.20 -0.0
1,503,792 - PFLU_RS06725 0.20 +0.4
1,503,953 + PFLU_RS06725 0.38 -0.8
1,503,953 + PFLU_RS06725 0.38 -0.6
1,503,953 + PFLU_RS06725 0.38 +0.4
1,503,953 + PFLU_RS06725 0.38 +0.8
1,503,953 + PFLU_RS06725 0.38 -1.1
1,503,954 - PFLU_RS06725 0.39 +1.2
1,503,954 - PFLU_RS06725 0.39 +0.4
1,504,138 + PFLU_RS06725 0.60 +1.0
1,504,138 + PFLU_RS06725 0.60 +0.8
1,504,139 - PFLU_RS06725 0.60 -0.8
1,504,293 + PFLU_RS06725 0.78 +0.3
1,504,316 + PFLU_RS06725 0.81 -1.3
1,504,316 + PFLU_RS06725 0.81 +0.1
1,504,316 + PFLU_RS06725 0.81 -0.2
1,504,329 - PFLU_RS06725 0.82 -0.3
1,504,329 - PFLU_RS06725 0.82 -0.1
1,504,330 + PFLU_RS06725 0.82 +0.3
1,504,352 + PFLU_RS06725 0.85 +0.5
1,504,353 - PFLU_RS06725 0.85 +1.4
1,504,353 - PFLU_RS06725 0.85 -0.3
1,504,353 - PFLU_RS06725 0.85 -1.3
1,504,412 + -1.5
1,504,412 + +0.5
1,504,412 + -1.3
1,504,412 + +0.4
1,504,412 + +0.8
1,504,412 + +1.0
1,504,412 + -0.9
1,504,412 + -1.6
1,504,412 + -1.1
1,504,412 + -0.6
1,504,412 + -2.6
1,504,412 + -0.5
1,504,412 + -1.7
1,504,413 - -0.7
1,504,413 - +0.7
1,504,413 - +1.3
1,504,413 - -1.3
1,504,413 - -0.2
1,504,413 - -0.7
1,504,413 - +0.3
1,504,413 - -0.1
1,504,413 - +0.8
1,504,413 - +0.8
1,504,413 - -0.6
1,504,413 - +0.2
1,504,413 - +0.5
1,504,413 - +0.0
1,504,486 + -0.4
1,504,486 + -2.1
1,504,486 + +0.6
1,504,486 + -1.3
1,504,487 - +0.8
1,504,616 + PFLU_RS06730 0.17 +0.1
1,504,617 - PFLU_RS06730 0.18 -0.8
1,504,624 + PFLU_RS06730 0.18 +1.3
1,504,624 + PFLU_RS06730 0.18 +0.6
1,504,624 + PFLU_RS06730 0.18 -1.0
1,504,624 + PFLU_RS06730 0.18 -0.1
1,504,624 + PFLU_RS06730 0.18 -1.9
1,504,624 + PFLU_RS06730 0.18 -2.3
1,504,624 + PFLU_RS06730 0.18 +0.1
1,504,624 + PFLU_RS06730 0.18 +0.2
1,504,624 + PFLU_RS06730 0.18 +0.8
1,504,625 - PFLU_RS06730 0.19 +0.8
1,504,625 - PFLU_RS06730 0.19 -0.3
1,504,625 - PFLU_RS06730 0.19 -2.1
1,504,625 - PFLU_RS06730 0.19 +0.9
1,504,625 - PFLU_RS06730 0.19 +0.9
1,504,625 - PFLU_RS06730 0.19 +0.7
1,504,625 - PFLU_RS06730 0.19 +0.1
1,504,709 + PFLU_RS06730 0.29 +0.9
1,504,709 + PFLU_RS06730 0.29 -1.2
1,504,829 - PFLU_RS06730 0.45 +2.3
1,504,829 - PFLU_RS06730 0.45 -1.1
1,504,829 - PFLU_RS06730 0.45 -0.8
1,504,990 - PFLU_RS06730 0.65 +2.6
1,504,990 - PFLU_RS06730 0.65 +0.9
1,504,990 - PFLU_RS06730 0.65 -1.2
1,505,029 - PFLU_RS06730 0.70 +0.0
1,505,029 - PFLU_RS06730 0.70 -0.4
1,505,029 - PFLU_RS06730 0.70 -1.0
1,505,273 + +0.2
1,505,273 + +0.2
1,505,273 + -0.9
1,505,274 - +0.0
1,505,274 - +1.3
1,505,274 - +1.8
1,505,291 + -2.1

Or see this region's nucleotide sequence