Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06690

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06685 and PFLU_RS06690 overlap by 4 nucleotidesPFLU_RS06690 and PFLU_RS06695 are separated by 90 nucleotides PFLU_RS06685: PFLU_RS06685 - aminotransferase class V-fold PLP-dependent enzyme, at 1,495,154 to 1,496,335 _RS06685 PFLU_RS06690: PFLU_RS06690 - RidA family protein, at 1,496,332 to 1,496,802 _RS06690 PFLU_RS06695: PFLU_RS06695 - LysR family transcriptional regulator, at 1,496,893 to 1,497,759 _RS06695 Position (kb) 1496 1497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.656 kb on + strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.657 kb on - strand, within PFLU_RS06685at 1495.779 kb on + strand, within PFLU_RS06685at 1495.780 kb on - strand, within PFLU_RS06685at 1495.780 kb on - strand, within PFLU_RS06685at 1495.780 kb on - strand, within PFLU_RS06685at 1495.780 kb on - strand, within PFLU_RS06685at 1495.780 kb on - strand, within PFLU_RS06685at 1496.505 kb on + strand, within PFLU_RS06690at 1496.651 kb on + strand, within PFLU_RS06690at 1496.651 kb on + strand, within PFLU_RS06690at 1496.651 kb on + strand, within PFLU_RS06690at 1496.652 kb on - strand, within PFLU_RS06690at 1496.668 kb on + strand, within PFLU_RS06690at 1496.668 kb on + strand, within PFLU_RS06690at 1496.668 kb on + strand, within PFLU_RS06690at 1496.668 kb on + strand, within PFLU_RS06690at 1496.668 kb on + strand, within PFLU_RS06690at 1496.669 kb on - strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.726 kb on + strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.727 kb on - strand, within PFLU_RS06690at 1496.751 kb on + strand, within PFLU_RS06690at 1496.865 kb on + strandat 1496.866 kb on - strandat 1496.866 kb on - strandat 1496.866 kb on - strandat 1496.866 kb on - strandat 1496.882 kb on - strandat 1496.882 kb on - strandat 1496.889 kb on + strandat 1496.890 kb on - strandat 1496.997 kb on - strand, within PFLU_RS06695at 1497.019 kb on + strand, within PFLU_RS06695at 1497.019 kb on + strand, within PFLU_RS06695at 1497.020 kb on - strand, within PFLU_RS06695at 1497.020 kb on - strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.113 kb on + strand, within PFLU_RS06695at 1497.114 kb on - strand, within PFLU_RS06695at 1497.114 kb on - strand, within PFLU_RS06695at 1497.114 kb on - strand, within PFLU_RS06695at 1497.158 kb on + strand, within PFLU_RS06695at 1497.229 kb on + strand, within PFLU_RS06695at 1497.229 kb on + strand, within PFLU_RS06695at 1497.373 kb on + strand, within PFLU_RS06695at 1497.373 kb on + strand, within PFLU_RS06695at 1497.373 kb on + strand, within PFLU_RS06695at 1497.373 kb on + strand, within PFLU_RS06695at 1497.373 kb on + strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.374 kb on - strand, within PFLU_RS06695at 1497.466 kb on + strand, within PFLU_RS06695at 1497.467 kb on - strand, within PFLU_RS06695at 1497.545 kb on + strand, within PFLU_RS06695at 1497.545 kb on + strand, within PFLU_RS06695at 1497.545 kb on + strand, within PFLU_RS06695at 1497.546 kb on - strand, within PFLU_RS06695at 1497.546 kb on - strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.548 kb on + strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.549 kb on - strand, within PFLU_RS06695at 1497.595 kb on - strand, within PFLU_RS06695at 1497.606 kb on + strand, within PFLU_RS06695at 1497.614 kb on + strand, within PFLU_RS06695at 1497.614 kb on + strand, within PFLU_RS06695at 1497.614 kb on + strand, within PFLU_RS06695at 1497.614 kb on + strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.615 kb on - strand, within PFLU_RS06695at 1497.684 kb on + strandat 1497.684 kb on + strandat 1497.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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1,495,656 + PFLU_RS06685 0.42 +1.2
1,495,656 + PFLU_RS06685 0.42 -0.8
1,495,656 + PFLU_RS06685 0.42 -0.4
1,495,656 + PFLU_RS06685 0.42 -1.0
1,495,656 + PFLU_RS06685 0.42 -0.8
1,495,656 + PFLU_RS06685 0.42 +0.5
1,495,656 + PFLU_RS06685 0.42 -0.0
1,495,657 - PFLU_RS06685 0.43 +0.9
1,495,657 - PFLU_RS06685 0.43 +1.3
1,495,657 - PFLU_RS06685 0.43 -3.1
1,495,657 - PFLU_RS06685 0.43 -0.4
1,495,657 - PFLU_RS06685 0.43 +0.7
1,495,657 - PFLU_RS06685 0.43 +1.1
1,495,657 - PFLU_RS06685 0.43 -1.1
1,495,657 - PFLU_RS06685 0.43 +1.1
1,495,779 + PFLU_RS06685 0.53 +0.4
1,495,780 - PFLU_RS06685 0.53 +0.2
1,495,780 - PFLU_RS06685 0.53 -1.0
1,495,780 - PFLU_RS06685 0.53 -1.5
1,495,780 - PFLU_RS06685 0.53 -1.1
1,495,780 - PFLU_RS06685 0.53 +0.2
1,496,505 + PFLU_RS06690 0.37 -0.0
1,496,651 + PFLU_RS06690 0.68 +1.5
1,496,651 + PFLU_RS06690 0.68 +0.6
1,496,651 + PFLU_RS06690 0.68 +0.7
1,496,652 - PFLU_RS06690 0.68 +1.2
1,496,668 + PFLU_RS06690 0.71 -0.2
1,496,668 + PFLU_RS06690 0.71 +1.2
1,496,668 + PFLU_RS06690 0.71 -0.3
1,496,668 + PFLU_RS06690 0.71 +0.2
1,496,668 + PFLU_RS06690 0.71 -0.1
1,496,669 - PFLU_RS06690 0.72 -1.0
1,496,726 + PFLU_RS06690 0.84 +1.0
1,496,726 + PFLU_RS06690 0.84 +1.2
1,496,726 + PFLU_RS06690 0.84 -0.3
1,496,726 + PFLU_RS06690 0.84 -2.7
1,496,726 + PFLU_RS06690 0.84 +1.3
1,496,726 + PFLU_RS06690 0.84 +0.0
1,496,726 + PFLU_RS06690 0.84 -1.2
1,496,727 - PFLU_RS06690 0.84 +1.7
1,496,727 - PFLU_RS06690 0.84 -0.4
1,496,727 - PFLU_RS06690 0.84 -0.8
1,496,727 - PFLU_RS06690 0.84 +1.0
1,496,727 - PFLU_RS06690 0.84 +0.1
1,496,727 - PFLU_RS06690 0.84 -0.5
1,496,727 - PFLU_RS06690 0.84 +0.4
1,496,727 - PFLU_RS06690 0.84 -0.4
1,496,751 + PFLU_RS06690 0.89 +1.0
1,496,865 + -0.5
1,496,866 - +0.8
1,496,866 - -2.6
1,496,866 - -1.2
1,496,866 - -0.3
1,496,882 - -1.2
1,496,882 - +0.5
1,496,889 + -0.6
1,496,890 - +1.1
1,496,997 - PFLU_RS06695 0.12 +0.5
1,497,019 + PFLU_RS06695 0.15 +0.6
1,497,019 + PFLU_RS06695 0.15 +0.4
1,497,020 - PFLU_RS06695 0.15 -0.3
1,497,020 - PFLU_RS06695 0.15 +1.0
1,497,113 + PFLU_RS06695 0.25 -1.6
1,497,113 + PFLU_RS06695 0.25 -1.3
1,497,113 + PFLU_RS06695 0.25 +0.8
1,497,113 + PFLU_RS06695 0.25 -0.0
1,497,113 + PFLU_RS06695 0.25 -1.5
1,497,113 + PFLU_RS06695 0.25 +1.0
1,497,114 - PFLU_RS06695 0.25 +0.5
1,497,114 - PFLU_RS06695 0.25 +0.5
1,497,114 - PFLU_RS06695 0.25 -0.2
1,497,158 + PFLU_RS06695 0.31 +0.5
1,497,229 + PFLU_RS06695 0.39 +0.6
1,497,229 + PFLU_RS06695 0.39 -0.5
1,497,373 + PFLU_RS06695 0.55 +0.9
1,497,373 + PFLU_RS06695 0.55 +1.0
1,497,373 + PFLU_RS06695 0.55 +0.5
1,497,373 + PFLU_RS06695 0.55 -0.8
1,497,373 + PFLU_RS06695 0.55 +0.9
1,497,374 - PFLU_RS06695 0.55 -0.2
1,497,374 - PFLU_RS06695 0.55 -2.4
1,497,374 - PFLU_RS06695 0.55 -1.1
1,497,374 - PFLU_RS06695 0.55 -0.1
1,497,374 - PFLU_RS06695 0.55 +0.5
1,497,374 - PFLU_RS06695 0.55 -1.0
1,497,374 - PFLU_RS06695 0.55 -0.4
1,497,466 + PFLU_RS06695 0.66 -0.3
1,497,467 - PFLU_RS06695 0.66 -1.8
1,497,545 + PFLU_RS06695 0.75 -1.3
1,497,545 + PFLU_RS06695 0.75 +1.5
1,497,545 + PFLU_RS06695 0.75 +1.1
1,497,546 - PFLU_RS06695 0.75 -0.1
1,497,546 - PFLU_RS06695 0.75 +1.5
1,497,548 + PFLU_RS06695 0.76 +1.2
1,497,548 + PFLU_RS06695 0.76 +0.8
1,497,548 + PFLU_RS06695 0.76 -0.4
1,497,548 + PFLU_RS06695 0.76 +0.5
1,497,548 + PFLU_RS06695 0.76 -3.4
1,497,548 + PFLU_RS06695 0.76 -0.9
1,497,548 + PFLU_RS06695 0.76 -0.1
1,497,548 + PFLU_RS06695 0.76 +0.5
1,497,548 + PFLU_RS06695 0.76 +1.1
1,497,548 + PFLU_RS06695 0.76 +0.5
1,497,548 + PFLU_RS06695 0.76 +1.3
1,497,549 - PFLU_RS06695 0.76 +1.3
1,497,549 - PFLU_RS06695 0.76 -0.5
1,497,549 - PFLU_RS06695 0.76 -2.9
1,497,549 - PFLU_RS06695 0.76 +0.3
1,497,549 - PFLU_RS06695 0.76 -0.5
1,497,549 - PFLU_RS06695 0.76 +0.2
1,497,549 - PFLU_RS06695 0.76 +2.7
1,497,549 - PFLU_RS06695 0.76 +0.4
1,497,549 - PFLU_RS06695 0.76 -0.5
1,497,595 - PFLU_RS06695 0.81 -0.1
1,497,606 + PFLU_RS06695 0.82 -0.3
1,497,614 + PFLU_RS06695 0.83 -0.8
1,497,614 + PFLU_RS06695 0.83 -0.8
1,497,614 + PFLU_RS06695 0.83 -3.9
1,497,614 + PFLU_RS06695 0.83 -0.0
1,497,615 - PFLU_RS06695 0.83 +0.1
1,497,615 - PFLU_RS06695 0.83 +1.2
1,497,615 - PFLU_RS06695 0.83 +1.7
1,497,615 - PFLU_RS06695 0.83 -0.2
1,497,615 - PFLU_RS06695 0.83 +0.1
1,497,615 - PFLU_RS06695 0.83 -0.4
1,497,615 - PFLU_RS06695 0.83 +0.5
1,497,684 + +1.0
1,497,684 + +1.6
1,497,685 - +2.4

Or see this region's nucleotide sequence