Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS06330 and PFLU_RS06335 overlap by 4 nucleotides PFLU_RS06335 and PFLU_RS06340 are separated by 2 nucleotides PFLU_RS06340 and PFLU_RS06345 overlap by 4 nucleotides PFLU_RS06345 and PFLU_RS06350 are separated by 78 nucleotides
PFLU_RS06330: PFLU_RS06330 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,417,805 to 1,418,245
_RS06330
PFLU_RS06335: PFLU_RS06335 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,418,242 to 1,419,018
_RS06335
PFLU_RS06340: PFLU_RS06340 - lipid-A-disaccharide synthase, at 1,419,021 to 1,420,160
_RS06340
PFLU_RS06345: PFLU_RS06345 - ribonuclease HII, at 1,420,157 to 1,420,789
_RS06345
PFLU_RS06350: PFLU_RS06350 - DNA polymerase III subunit alpha, at 1,420,868 to 1,424,389
_RS06350
Position (kb) 1419
1420
1421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1420.157 kb on - strand at 1420.230 kb on + strand, within PFLU_RS06345 at 1420.231 kb on - strand, within PFLU_RS06345 at 1420.349 kb on + strand, within PFLU_RS06345 at 1420.385 kb on - strand, within PFLU_RS06345 at 1420.385 kb on - strand, within PFLU_RS06345 at 1420.555 kb on + strand, within PFLU_RS06345 at 1420.555 kb on + strand, within PFLU_RS06345 at 1420.555 kb on + strand, within PFLU_RS06345 at 1420.556 kb on - strand, within PFLU_RS06345 at 1420.556 kb on - strand, within PFLU_RS06345 at 1420.556 kb on - strand, within PFLU_RS06345 at 1420.556 kb on - strand, within PFLU_RS06345 at 1420.556 kb on - strand, within PFLU_RS06345 at 1420.663 kb on + strand, within PFLU_RS06345 at 1420.663 kb on + strand, within PFLU_RS06345 at 1420.664 kb on - strand, within PFLU_RS06345 at 1420.664 kb on - strand, within PFLU_RS06345 at 1420.664 kb on - strand, within PFLU_RS06345 at 1420.664 kb on - strand, within PFLU_RS06345 at 1420.787 kb on + strand at 1420.787 kb on + strand at 1420.788 kb on - strand at 1420.788 kb on - strand at 1420.788 kb on - strand at 1420.822 kb on + strand at 1420.846 kb on + strand at 1420.846 kb on + strand at 1420.846 kb on + strand at 1420.846 kb on + strand at 1420.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 1,420,157 - -0.6 1,420,230 + PFLU_RS06345 0.12 +2.7 1,420,231 - PFLU_RS06345 0.12 -1.6 1,420,349 + PFLU_RS06345 0.30 -3.5 1,420,385 - PFLU_RS06345 0.36 -0.0 1,420,385 - PFLU_RS06345 0.36 -0.2 1,420,555 + PFLU_RS06345 0.63 -1.1 1,420,555 + PFLU_RS06345 0.63 -0.0 1,420,555 + PFLU_RS06345 0.63 -1.6 1,420,556 - PFLU_RS06345 0.63 -0.1 1,420,556 - PFLU_RS06345 0.63 +0.8 1,420,556 - PFLU_RS06345 0.63 +1.4 1,420,556 - PFLU_RS06345 0.63 +2.3 1,420,556 - PFLU_RS06345 0.63 +0.2 1,420,663 + PFLU_RS06345 0.80 +1.1 1,420,663 + PFLU_RS06345 0.80 +1.1 1,420,664 - PFLU_RS06345 0.80 -1.5 1,420,664 - PFLU_RS06345 0.80 -1.8 1,420,664 - PFLU_RS06345 0.80 -0.3 1,420,664 - PFLU_RS06345 0.80 +0.5 1,420,787 + +0.7 1,420,787 + +0.0 1,420,788 - +1.0 1,420,788 - +0.2 1,420,788 - +1.0 1,420,822 + +0.1 1,420,846 + -0.4 1,420,846 + +0.3 1,420,846 + -0.2 1,420,846 + +0.5 1,420,867 + +1.9
Or see this region's nucleotide sequence