Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03440 and PFLU_RS03445 overlap by 4 nucleotides PFLU_RS03445 and PFLU_RS03450 are separated by 41 nucleotides PFLU_RS03450 and PFLU_RS03455 are separated by 260 nucleotides
PFLU_RS03440: PFLU_RS03440 - ImmA/IrrE family metallo-endopeptidase, at 792,321 to 793,457
_RS03440
PFLU_RS03445: PFLU_RS03445 - DUF4411 family protein, at 793,454 to 793,951
_RS03445
PFLU_RS03450: PFLU_RS03450 - gluconate transporter, at 793,993 to 795,363
_RS03450
PFLU_RS03455: PFLU_RS03455 - cation transporter, at 795,624 to 796,529
_RS03455
Position (kb) 793
794
795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 793.043 kb on + strand, within PFLU_RS03440 at 793.043 kb on + strand, within PFLU_RS03440 at 793.043 kb on + strand, within PFLU_RS03440 at 793.044 kb on - strand, within PFLU_RS03440 at 793.044 kb on - strand, within PFLU_RS03440 at 793.044 kb on - strand, within PFLU_RS03440 at 793.044 kb on - strand, within PFLU_RS03440 at 793.070 kb on + strand, within PFLU_RS03440 at 793.239 kb on + strand, within PFLU_RS03440 at 793.240 kb on - strand, within PFLU_RS03440 at 793.249 kb on - strand, within PFLU_RS03440 at 793.249 kb on - strand, within PFLU_RS03440 at 793.249 kb on - strand, within PFLU_RS03440 at 793.251 kb on + strand, within PFLU_RS03440 at 793.252 kb on - strand, within PFLU_RS03440 at 793.280 kb on + strand, within PFLU_RS03440 at 793.281 kb on - strand, within PFLU_RS03440 at 793.281 kb on - strand, within PFLU_RS03440 at 793.281 kb on - strand, within PFLU_RS03440 at 793.302 kb on + strand, within PFLU_RS03440 at 793.303 kb on - strand, within PFLU_RS03440 at 793.303 kb on - strand, within PFLU_RS03440 at 793.305 kb on + strand, within PFLU_RS03440 at 793.305 kb on + strand, within PFLU_RS03440 at 793.305 kb on + strand, within PFLU_RS03440 at 793.464 kb on + strand at 793.464 kb on + strand at 793.464 kb on + strand at 793.464 kb on + strand at 793.464 kb on + strand at 793.464 kb on + strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.465 kb on - strand at 793.502 kb on + strand at 793.505 kb on + strand, within PFLU_RS03445 at 793.506 kb on - strand, within PFLU_RS03445 at 793.506 kb on - strand, within PFLU_RS03445 at 793.530 kb on - strand, within PFLU_RS03445 at 793.576 kb on + strand, within PFLU_RS03445 at 793.588 kb on - strand, within PFLU_RS03445 at 793.599 kb on + strand, within PFLU_RS03445 at 793.599 kb on + strand, within PFLU_RS03445 at 793.639 kb on + strand, within PFLU_RS03445 at 793.639 kb on + strand, within PFLU_RS03445 at 793.639 kb on + strand, within PFLU_RS03445 at 793.639 kb on + strand, within PFLU_RS03445 at 793.640 kb on - strand, within PFLU_RS03445 at 793.640 kb on - strand, within PFLU_RS03445 at 793.640 kb on - strand, within PFLU_RS03445 at 793.643 kb on - strand, within PFLU_RS03445 at 793.643 kb on - strand, within PFLU_RS03445 at 793.643 kb on - strand, within PFLU_RS03445 at 793.675 kb on + strand, within PFLU_RS03445 at 793.676 kb on - strand, within PFLU_RS03445 at 793.676 kb on - strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.829 kb on + strand, within PFLU_RS03445 at 793.830 kb on - strand, within PFLU_RS03445 at 793.830 kb on - strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.892 kb on + strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.893 kb on - strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.900 kb on + strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.901 kb on - strand, within PFLU_RS03445 at 793.983 kb on + strand at 793.983 kb on + strand at 793.983 kb on + strand at 793.983 kb on + strand at 793.984 kb on - strand at 793.984 kb on - strand at 793.984 kb on - strand at 793.984 kb on - strand at 793.984 kb on - strand at 793.988 kb on + strand at 794.022 kb on + strand at 794.023 kb on - strand at 794.102 kb on + strand at 794.102 kb on + strand at 794.103 kb on - strand at 794.103 kb on - strand at 794.310 kb on - strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.042 kb on + strand, within PFLU_RS03450 at 795.043 kb on - strand, within PFLU_RS03450 at 795.043 kb on - strand, within PFLU_RS03450 at 795.043 kb on - strand, within PFLU_RS03450 at 795.043 kb on - strand, within PFLU_RS03450 at 795.043 kb on - strand, within PFLU_RS03450 at 795.058 kb on + strand, within PFLU_RS03450 at 795.058 kb on + strand, within PFLU_RS03450 at 795.058 kb on + strand, within PFLU_RS03450 at 795.059 kb on - strand, within PFLU_RS03450 at 795.073 kb on + strand, within PFLU_RS03450 at 795.308 kb on - strand at 795.319 kb on - strand at 795.319 kb on - strand at 795.319 kb on - strand at 795.355 kb on + strand at 795.427 kb on + strand at 795.427 kb on + strand at 795.427 kb on + strand at 795.428 kb on - strand at 795.428 kb on - strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.434 kb on + strand at 795.435 kb on - strand at 795.435 kb on - strand at 795.435 kb on - strand at 795.475 kb on + strand at 795.475 kb on + strand at 795.475 kb on + strand at 795.475 kb on + strand at 795.476 kb on - strand at 795.476 kb on - strand at 795.481 kb on + strand at 795.482 kb on - strand at 795.482 kb on - strand at 795.482 kb on - strand at 795.539 kb on - strand at 795.546 kb on + strand at 795.546 kb on + strand at 795.546 kb on + strand at 795.567 kb on + strand at 795.568 kb on - strand at 795.568 kb on - strand at 795.604 kb on + strand at 795.604 kb on + strand at 795.604 kb on + strand at 795.605 kb on - strand at 795.605 kb on - strand at 795.734 kb on + strand, within PFLU_RS03455 at 795.735 kb on - strand, within PFLU_RS03455 at 795.735 kb on - strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.943 kb on - strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.971 kb on - strand, within PFLU_RS03455 at 795.971 kb on - strand, within PFLU_RS03455 at 796.000 kb on + strand, within PFLU_RS03455 at 796.001 kb on - strand, within PFLU_RS03455 at 796.100 kb on + strand, within PFLU_RS03455 at 796.146 kb on + strand, within PFLU_RS03455 at 796.146 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.338 kb on - strand, within PFLU_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 793,043 + PFLU_RS03440 0.64 +0.1 793,043 + PFLU_RS03440 0.64 -0.6 793,043 + PFLU_RS03440 0.64 +0.5 793,044 - PFLU_RS03440 0.64 -0.6 793,044 - PFLU_RS03440 0.64 +0.6 793,044 - PFLU_RS03440 0.64 +0.3 793,044 - PFLU_RS03440 0.64 -1.7 793,070 + PFLU_RS03440 0.66 -0.8 793,239 + PFLU_RS03440 0.81 -0.0 793,240 - PFLU_RS03440 0.81 +0.7 793,249 - PFLU_RS03440 0.82 +0.2 793,249 - PFLU_RS03440 0.82 +1.0 793,249 - PFLU_RS03440 0.82 +0.6 793,251 + PFLU_RS03440 0.82 +0.2 793,252 - PFLU_RS03440 0.82 +0.3 793,280 + PFLU_RS03440 0.84 +0.9 793,281 - PFLU_RS03440 0.84 +0.8 793,281 - PFLU_RS03440 0.84 +0.4 793,281 - PFLU_RS03440 0.84 +1.4 793,302 + PFLU_RS03440 0.86 -0.5 793,303 - PFLU_RS03440 0.86 -0.8 793,303 - PFLU_RS03440 0.86 -0.6 793,305 + PFLU_RS03440 0.87 +0.4 793,305 + PFLU_RS03440 0.87 -0.8 793,305 + PFLU_RS03440 0.87 -1.4 793,464 + +0.5 793,464 + +1.1 793,464 + -0.3 793,464 + -0.8 793,464 + -1.5 793,464 + -2.5 793,465 - -0.9 793,465 - +1.1 793,465 - +0.6 793,465 - +1.0 793,465 - -2.5 793,465 - +1.0 793,465 - +0.8 793,465 - +1.6 793,502 + -0.0 793,505 + PFLU_RS03445 0.10 +0.5 793,506 - PFLU_RS03445 0.10 -0.9 793,506 - PFLU_RS03445 0.10 +0.6 793,530 - PFLU_RS03445 0.15 -1.0 793,576 + PFLU_RS03445 0.24 +0.6 793,588 - PFLU_RS03445 0.27 -0.4 793,599 + PFLU_RS03445 0.29 +1.4 793,599 + PFLU_RS03445 0.29 -0.8 793,639 + PFLU_RS03445 0.37 +0.7 793,639 + PFLU_RS03445 0.37 +0.7 793,639 + PFLU_RS03445 0.37 +1.3 793,639 + PFLU_RS03445 0.37 -0.1 793,640 - PFLU_RS03445 0.37 -1.0 793,640 - PFLU_RS03445 0.37 -1.6 793,640 - PFLU_RS03445 0.37 -0.5 793,643 - PFLU_RS03445 0.38 -0.1 793,643 - PFLU_RS03445 0.38 +1.7 793,643 - PFLU_RS03445 0.38 +1.1 793,675 + PFLU_RS03445 0.44 +0.0 793,676 - PFLU_RS03445 0.45 +0.7 793,676 - PFLU_RS03445 0.45 +2.4 793,829 + PFLU_RS03445 0.75 +1.3 793,829 + PFLU_RS03445 0.75 +0.2 793,829 + PFLU_RS03445 0.75 +0.2 793,829 + PFLU_RS03445 0.75 +0.4 793,829 + PFLU_RS03445 0.75 +0.7 793,829 + PFLU_RS03445 0.75 +0.7 793,830 - PFLU_RS03445 0.76 -0.8 793,830 - PFLU_RS03445 0.76 -1.2 793,892 + PFLU_RS03445 0.88 +2.5 793,892 + PFLU_RS03445 0.88 +0.5 793,892 + PFLU_RS03445 0.88 +0.6 793,892 + PFLU_RS03445 0.88 +0.7 793,892 + PFLU_RS03445 0.88 +0.8 793,892 + PFLU_RS03445 0.88 +0.0 793,892 + PFLU_RS03445 0.88 -2.8 793,892 + PFLU_RS03445 0.88 +0.2 793,892 + PFLU_RS03445 0.88 +1.6 793,892 + PFLU_RS03445 0.88 -2.9 793,892 + PFLU_RS03445 0.88 -0.3 793,892 + PFLU_RS03445 0.88 +0.1 793,892 + PFLU_RS03445 0.88 -0.7 793,892 + PFLU_RS03445 0.88 -1.2 793,893 - PFLU_RS03445 0.88 -0.1 793,893 - PFLU_RS03445 0.88 +1.1 793,893 - PFLU_RS03445 0.88 -0.6 793,893 - PFLU_RS03445 0.88 +0.1 793,893 - PFLU_RS03445 0.88 +0.4 793,893 - PFLU_RS03445 0.88 +1.3 793,893 - PFLU_RS03445 0.88 +1.8 793,893 - PFLU_RS03445 0.88 -0.5 793,893 - PFLU_RS03445 0.88 -2.0 793,893 - PFLU_RS03445 0.88 +0.7 793,893 - PFLU_RS03445 0.88 +0.7 793,893 - PFLU_RS03445 0.88 -0.7 793,893 - PFLU_RS03445 0.88 -0.1 793,893 - PFLU_RS03445 0.88 -1.0 793,900 + PFLU_RS03445 0.90 -0.4 793,900 + PFLU_RS03445 0.90 -2.8 793,900 + PFLU_RS03445 0.90 +0.2 793,900 + PFLU_RS03445 0.90 +1.0 793,900 + PFLU_RS03445 0.90 -1.4 793,900 + PFLU_RS03445 0.90 -1.0 793,900 + PFLU_RS03445 0.90 +1.1 793,900 + PFLU_RS03445 0.90 +1.3 793,900 + PFLU_RS03445 0.90 -1.6 793,900 + PFLU_RS03445 0.90 -0.4 793,900 + PFLU_RS03445 0.90 -2.2 793,901 - PFLU_RS03445 0.90 -1.4 793,901 - PFLU_RS03445 0.90 -0.1 793,901 - PFLU_RS03445 0.90 -0.2 793,901 - PFLU_RS03445 0.90 +0.9 793,901 - PFLU_RS03445 0.90 +1.0 793,901 - PFLU_RS03445 0.90 -1.5 793,983 + +1.8 793,983 + -1.3 793,983 + +0.6 793,983 + +0.5 793,984 - +0.6 793,984 - -0.2 793,984 - -0.5 793,984 - +0.3 793,984 - -0.1 793,988 + +1.1 794,022 + +0.7 794,023 - +0.3 794,102 + -0.9 794,102 + -0.5 794,103 - +0.9 794,103 - -1.8 794,310 - PFLU_RS03450 0.23 -0.0 795,042 + PFLU_RS03450 0.77 -0.6 795,042 + PFLU_RS03450 0.77 +0.5 795,042 + PFLU_RS03450 0.77 -0.9 795,042 + PFLU_RS03450 0.77 -0.4 795,042 + PFLU_RS03450 0.77 +0.2 795,042 + PFLU_RS03450 0.77 +0.7 795,042 + PFLU_RS03450 0.77 +0.1 795,042 + PFLU_RS03450 0.77 +0.0 795,043 - PFLU_RS03450 0.77 -1.3 795,043 - PFLU_RS03450 0.77 +0.0 795,043 - PFLU_RS03450 0.77 -1.1 795,043 - PFLU_RS03450 0.77 +0.9 795,043 - PFLU_RS03450 0.77 +0.9 795,058 + PFLU_RS03450 0.78 +0.3 795,058 + PFLU_RS03450 0.78 +0.5 795,058 + PFLU_RS03450 0.78 -0.1 795,059 - PFLU_RS03450 0.78 +1.3 795,073 + PFLU_RS03450 0.79 +1.2 795,308 - +0.7 795,319 - -2.6 795,319 - +1.2 795,319 - -0.6 795,355 + -0.9 795,427 + -1.8 795,427 + -0.6 795,427 + +2.0 795,428 - +0.8 795,428 - +0.5 795,434 + +0.4 795,434 + +1.0 795,434 + -1.2 795,434 + +0.2 795,434 + -0.9 795,434 + -0.5 795,434 + +0.8 795,435 - +0.4 795,435 - +0.2 795,435 - -0.5 795,475 + -0.3 795,475 + -0.2 795,475 + +0.1 795,475 + -0.9 795,476 - +0.2 795,476 - +1.0 795,481 + +0.2 795,482 - +1.0 795,482 - -0.1 795,482 - +1.0 795,539 - +1.1 795,546 + -0.1 795,546 + -0.0 795,546 + -1.0 795,567 + +0.7 795,568 - -2.6 795,568 - -0.6 795,604 + +0.6 795,604 + +0.4 795,604 + +0.2 795,605 - +0.6 795,605 - -3.0 795,734 + PFLU_RS03455 0.12 +0.4 795,735 - PFLU_RS03455 0.12 -1.0 795,735 - PFLU_RS03455 0.12 -0.3 795,924 + PFLU_RS03455 0.33 +2.0 795,924 + PFLU_RS03455 0.33 +0.9 795,924 + PFLU_RS03455 0.33 +1.5 795,924 + PFLU_RS03455 0.33 -0.7 795,924 + PFLU_RS03455 0.33 -0.2 795,925 - PFLU_RS03455 0.33 -0.2 795,925 - PFLU_RS03455 0.33 +0.6 795,925 - PFLU_RS03455 0.33 +0.6 795,925 - PFLU_RS03455 0.33 -0.6 795,925 - PFLU_RS03455 0.33 -0.1 795,925 - PFLU_RS03455 0.33 +0.4 795,925 - PFLU_RS03455 0.33 -3.6 795,925 - PFLU_RS03455 0.33 +0.5 795,943 - PFLU_RS03455 0.35 -1.2 795,970 + PFLU_RS03455 0.38 -1.8 795,970 + PFLU_RS03455 0.38 +0.8 795,970 + PFLU_RS03455 0.38 -0.4 795,970 + PFLU_RS03455 0.38 +1.0 795,970 + PFLU_RS03455 0.38 -1.6 795,970 + PFLU_RS03455 0.38 +0.6 795,970 + PFLU_RS03455 0.38 +0.1 795,971 - PFLU_RS03455 0.38 -1.9 795,971 - PFLU_RS03455 0.38 -2.0 796,000 + PFLU_RS03455 0.42 -0.4 796,001 - PFLU_RS03455 0.42 +0.5 796,100 + PFLU_RS03455 0.53 +1.4 796,146 + PFLU_RS03455 0.58 -0.3 796,146 + PFLU_RS03455 0.58 -1.9 796,324 + PFLU_RS03455 0.77 +0.1 796,324 + PFLU_RS03455 0.77 +0.8 796,324 + PFLU_RS03455 0.77 -2.2 796,325 - PFLU_RS03455 0.77 +0.2 796,325 - PFLU_RS03455 0.77 -1.0 796,325 - PFLU_RS03455 0.77 -1.8 796,325 - PFLU_RS03455 0.77 +1.8 796,337 + PFLU_RS03455 0.79 -1.0 796,337 + PFLU_RS03455 0.79 +0.5 796,338 - PFLU_RS03455 0.79 +2.0
Or see this region's nucleotide sequence