Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01480 and PFLU_RS01485 overlap by 4 nucleotides PFLU_RS01485 and PFLU_RS01490 overlap by 19 nucleotides
PFLU_RS01480: PFLU_RS01480 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 330,502 to 332,769
_RS01480
PFLU_RS01485: PFLU_RS01485 - cellulase, at 332,766 to 333,962
_RS01485
PFLU_RS01490: PFLU_RS01490 - cellulose biosynthesis protein BcsC, at 333,944 to 337,783
_RS01490
Position (kb) 332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.894 kb on + strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.895 kb on - strand, within PFLU_RS01480 at 331.900 kb on + strand, within PFLU_RS01480 at 331.900 kb on + strand, within PFLU_RS01480 at 331.900 kb on + strand, within PFLU_RS01480 at 331.901 kb on - strand, within PFLU_RS01480 at 331.901 kb on - strand, within PFLU_RS01480 at 331.901 kb on - strand, within PFLU_RS01480 at 331.901 kb on - strand, within PFLU_RS01480 at 331.901 kb on - strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.996 kb on + strand, within PFLU_RS01480 at 331.997 kb on - strand, within PFLU_RS01480 at 331.997 kb on - strand, within PFLU_RS01480 at 331.997 kb on - strand, within PFLU_RS01480 at 331.997 kb on - strand, within PFLU_RS01480 at 332.095 kb on + strand, within PFLU_RS01480 at 332.095 kb on + strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.096 kb on - strand, within PFLU_RS01480 at 332.119 kb on + strand, within PFLU_RS01480 at 332.120 kb on - strand, within PFLU_RS01480 at 332.174 kb on + strand, within PFLU_RS01480 at 332.175 kb on - strand, within PFLU_RS01480 at 332.180 kb on + strand, within PFLU_RS01480 at 332.180 kb on + strand, within PFLU_RS01480 at 332.275 kb on + strand, within PFLU_RS01480 at 332.275 kb on + strand, within PFLU_RS01480 at 332.275 kb on + strand, within PFLU_RS01480 at 332.275 kb on + strand, within PFLU_RS01480 at 332.276 kb on - strand, within PFLU_RS01480 at 332.335 kb on + strand, within PFLU_RS01480 at 332.336 kb on - strand, within PFLU_RS01480 at 332.336 kb on - strand, within PFLU_RS01480 at 332.336 kb on - strand, within PFLU_RS01480 at 332.398 kb on - strand, within PFLU_RS01480 at 332.398 kb on - strand, within PFLU_RS01480 at 332.539 kb on + strand, within PFLU_RS01480 at 332.539 kb on + strand, within PFLU_RS01480 at 332.539 kb on + strand, within PFLU_RS01480 at 332.539 kb on + strand, within PFLU_RS01480 at 332.540 kb on - strand, within PFLU_RS01480 at 332.540 kb on - strand, within PFLU_RS01480 at 332.540 kb on - strand, within PFLU_RS01480 at 332.541 kb on + strand, within PFLU_RS01480 at 332.541 kb on + strand, within PFLU_RS01480 at 332.541 kb on + strand, within PFLU_RS01480 at 332.542 kb on - strand, within PFLU_RS01480 at 332.614 kb on + strand at 332.614 kb on + strand at 332.614 kb on + strand at 332.614 kb on + strand at 332.614 kb on + strand at 332.614 kb on + strand at 332.614 kb on + strand at 332.615 kb on - strand at 332.615 kb on - strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.617 kb on + strand at 332.618 kb on - strand at 332.618 kb on - strand at 332.618 kb on - strand at 332.618 kb on - strand at 332.618 kb on - strand at 332.618 kb on - strand at 332.635 kb on + strand at 332.635 kb on + strand at 332.635 kb on + strand at 332.635 kb on + strand at 332.636 kb on - strand at 332.728 kb on + strand at 332.728 kb on + strand at 332.728 kb on + strand at 332.728 kb on + strand at 332.728 kb on + strand at 332.729 kb on - strand at 332.729 kb on - strand at 332.729 kb on - strand at 332.729 kb on - strand at 332.729 kb on - strand at 332.729 kb on - strand at 332.777 kb on + strand at 332.777 kb on + strand at 332.777 kb on + strand at 332.777 kb on + strand at 332.866 kb on - strand at 332.949 kb on + strand, within PFLU_RS01485 at 332.950 kb on - strand, within PFLU_RS01485 at 332.988 kb on - strand, within PFLU_RS01485 at 332.988 kb on - strand, within PFLU_RS01485 at 332.988 kb on - strand, within PFLU_RS01485 at 333.142 kb on - strand, within PFLU_RS01485 at 333.142 kb on - strand, within PFLU_RS01485 at 333.282 kb on + strand, within PFLU_RS01485 at 333.283 kb on - strand, within PFLU_RS01485 at 333.321 kb on + strand, within PFLU_RS01485 at 333.525 kb on + strand, within PFLU_RS01485 at 333.525 kb on + strand, within PFLU_RS01485 at 333.525 kb on + strand, within PFLU_RS01485 at 333.526 kb on - strand, within PFLU_RS01485 at 333.526 kb on - strand, within PFLU_RS01485 at 333.526 kb on - strand, within PFLU_RS01485 at 333.526 kb on - strand, within PFLU_RS01485 at 333.526 kb on - strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.543 kb on + strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.544 kb on - strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.667 kb on + strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.668 kb on - strand, within PFLU_RS01485 at 333.700 kb on - strand, within PFLU_RS01485 at 333.700 kb on - strand, within PFLU_RS01485 at 333.701 kb on + strand, within PFLU_RS01485 at 333.702 kb on - strand, within PFLU_RS01485 at 333.846 kb on + strand at 333.847 kb on - strand at 333.847 kb on - strand at 333.847 kb on - strand at 333.849 kb on + strand at 333.849 kb on + strand at 333.850 kb on - strand at 333.850 kb on - strand at 333.850 kb on - strand at 333.855 kb on + strand at 333.855 kb on + strand at 333.855 kb on + strand at 333.855 kb on + strand at 333.855 kb on + strand at 333.855 kb on + strand at 333.856 kb on - strand at 333.856 kb on - strand at 333.856 kb on - strand at 333.856 kb on - strand at 333.856 kb on - strand at 333.960 kb on + strand at 334.046 kb on + strand at 334.049 kb on + strand at 334.049 kb on + strand at 334.050 kb on - strand at 334.191 kb on - strand at 334.346 kb on + strand, within PFLU_RS01490 at 334.347 kb on - strand, within PFLU_RS01490 at 334.398 kb on - strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.400 kb on + strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.401 kb on - strand, within PFLU_RS01490 at 334.546 kb on + strand, within PFLU_RS01490 at 334.547 kb on - strand, within PFLU_RS01490 at 334.548 kb on + strand, within PFLU_RS01490 at 334.549 kb on - strand, within PFLU_RS01490 at 334.736 kb on - strand, within PFLU_RS01490 at 334.736 kb on - strand, within PFLU_RS01490 at 334.736 kb on - strand, within PFLU_RS01490 at 334.907 kb on + strand, within PFLU_RS01490 at 334.925 kb on + strand, within PFLU_RS01490 at 334.926 kb on - strand, within PFLU_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 331,894 + PFLU_RS01480 0.61 +2.0 331,894 + PFLU_RS01480 0.61 +0.2 331,894 + PFLU_RS01480 0.61 -1.2 331,894 + PFLU_RS01480 0.61 -0.1 331,894 + PFLU_RS01480 0.61 -0.7 331,894 + PFLU_RS01480 0.61 -1.1 331,894 + PFLU_RS01480 0.61 +0.1 331,895 - PFLU_RS01480 0.61 -0.2 331,895 - PFLU_RS01480 0.61 +0.0 331,895 - PFLU_RS01480 0.61 -0.3 331,895 - PFLU_RS01480 0.61 +0.2 331,895 - PFLU_RS01480 0.61 -0.8 331,895 - PFLU_RS01480 0.61 -0.6 331,895 - PFLU_RS01480 0.61 +0.2 331,900 + PFLU_RS01480 0.62 +0.1 331,900 + PFLU_RS01480 0.62 -0.0 331,900 + PFLU_RS01480 0.62 +0.0 331,901 - PFLU_RS01480 0.62 -0.1 331,901 - PFLU_RS01480 0.62 +0.9 331,901 - PFLU_RS01480 0.62 -0.6 331,901 - PFLU_RS01480 0.62 +0.1 331,901 - PFLU_RS01480 0.62 +0.2 331,996 + PFLU_RS01480 0.66 +0.4 331,996 + PFLU_RS01480 0.66 +0.1 331,996 + PFLU_RS01480 0.66 +0.7 331,996 + PFLU_RS01480 0.66 -0.6 331,996 + PFLU_RS01480 0.66 +0.4 331,996 + PFLU_RS01480 0.66 -0.1 331,996 + PFLU_RS01480 0.66 -1.1 331,996 + PFLU_RS01480 0.66 -0.5 331,996 + PFLU_RS01480 0.66 -3.3 331,996 + PFLU_RS01480 0.66 +1.0 331,997 - PFLU_RS01480 0.66 +0.0 331,997 - PFLU_RS01480 0.66 -0.8 331,997 - PFLU_RS01480 0.66 +1.5 331,997 - PFLU_RS01480 0.66 -1.8 332,095 + PFLU_RS01480 0.70 -0.7 332,095 + PFLU_RS01480 0.70 -0.7 332,096 - PFLU_RS01480 0.70 +0.9 332,096 - PFLU_RS01480 0.70 -0.1 332,096 - PFLU_RS01480 0.70 -0.6 332,096 - PFLU_RS01480 0.70 -0.5 332,096 - PFLU_RS01480 0.70 +0.3 332,096 - PFLU_RS01480 0.70 +0.2 332,096 - PFLU_RS01480 0.70 +1.3 332,096 - PFLU_RS01480 0.70 -0.5 332,119 + PFLU_RS01480 0.71 -0.1 332,120 - PFLU_RS01480 0.71 +0.5 332,174 + PFLU_RS01480 0.74 +0.6 332,175 - PFLU_RS01480 0.74 -0.6 332,180 + PFLU_RS01480 0.74 +0.8 332,180 + PFLU_RS01480 0.74 -0.3 332,275 + PFLU_RS01480 0.78 -1.2 332,275 + PFLU_RS01480 0.78 -2.5 332,275 + PFLU_RS01480 0.78 -0.3 332,275 + PFLU_RS01480 0.78 +0.3 332,276 - PFLU_RS01480 0.78 -0.1 332,335 + PFLU_RS01480 0.81 -0.9 332,336 - PFLU_RS01480 0.81 +0.1 332,336 - PFLU_RS01480 0.81 -0.1 332,336 - PFLU_RS01480 0.81 +0.2 332,398 - PFLU_RS01480 0.84 -0.5 332,398 - PFLU_RS01480 0.84 +0.4 332,539 + PFLU_RS01480 0.90 +1.4 332,539 + PFLU_RS01480 0.90 +0.2 332,539 + PFLU_RS01480 0.90 -2.5 332,539 + PFLU_RS01480 0.90 +0.6 332,540 - PFLU_RS01480 0.90 +0.5 332,540 - PFLU_RS01480 0.90 +2.0 332,540 - PFLU_RS01480 0.90 +2.1 332,541 + PFLU_RS01480 0.90 +1.2 332,541 + PFLU_RS01480 0.90 +0.0 332,541 + PFLU_RS01480 0.90 +0.6 332,542 - PFLU_RS01480 0.90 -0.9 332,614 + +2.0 332,614 + +0.1 332,614 + +0.0 332,614 + +1.0 332,614 + +1.7 332,614 + +0.4 332,614 + -0.5 332,615 - +2.0 332,615 - +0.2 332,617 + -1.4 332,617 + -0.1 332,617 + -0.9 332,617 + -0.2 332,617 + -0.6 332,617 + +0.9 332,617 + +1.1 332,617 + -0.8 332,617 + +0.2 332,618 - -0.1 332,618 - +0.4 332,618 - -0.0 332,618 - +0.0 332,618 - -0.8 332,618 - +0.7 332,635 + +0.7 332,635 + +0.4 332,635 + -0.2 332,635 + -2.6 332,636 - -0.5 332,728 + +1.0 332,728 + -0.0 332,728 + -3.0 332,728 + +1.0 332,728 + +1.5 332,729 - -0.6 332,729 - -0.3 332,729 - +2.8 332,729 - +0.7 332,729 - +0.4 332,729 - -0.4 332,777 + -2.0 332,777 + -1.6 332,777 + -1.3 332,777 + -1.6 332,866 - -0.4 332,949 + PFLU_RS01485 0.15 -3.3 332,950 - PFLU_RS01485 0.15 -2.1 332,988 - PFLU_RS01485 0.19 -1.0 332,988 - PFLU_RS01485 0.19 -0.4 332,988 - PFLU_RS01485 0.19 -1.8 333,142 - PFLU_RS01485 0.31 -2.2 333,142 - PFLU_RS01485 0.31 -2.8 333,282 + PFLU_RS01485 0.43 -0.9 333,283 - PFLU_RS01485 0.43 -1.1 333,321 + PFLU_RS01485 0.46 -2.5 333,525 + PFLU_RS01485 0.63 -1.6 333,525 + PFLU_RS01485 0.63 -1.7 333,525 + PFLU_RS01485 0.63 -2.2 333,526 - PFLU_RS01485 0.63 -0.1 333,526 - PFLU_RS01485 0.63 +0.4 333,526 - PFLU_RS01485 0.63 -1.0 333,526 - PFLU_RS01485 0.63 -1.2 333,526 - PFLU_RS01485 0.63 -1.7 333,543 + PFLU_RS01485 0.65 -1.7 333,543 + PFLU_RS01485 0.65 -3.4 333,543 + PFLU_RS01485 0.65 -2.1 333,543 + PFLU_RS01485 0.65 -2.0 333,543 + PFLU_RS01485 0.65 -0.6 333,543 + PFLU_RS01485 0.65 +0.0 333,543 + PFLU_RS01485 0.65 -3.6 333,543 + PFLU_RS01485 0.65 -2.2 333,543 + PFLU_RS01485 0.65 -3.5 333,543 + PFLU_RS01485 0.65 -1.8 333,544 - PFLU_RS01485 0.65 -1.9 333,544 - PFLU_RS01485 0.65 -0.9 333,544 - PFLU_RS01485 0.65 -1.4 333,544 - PFLU_RS01485 0.65 -1.2 333,544 - PFLU_RS01485 0.65 -0.3 333,544 - PFLU_RS01485 0.65 -1.0 333,544 - PFLU_RS01485 0.65 -1.6 333,544 - PFLU_RS01485 0.65 +0.1 333,544 - PFLU_RS01485 0.65 +0.2 333,667 + PFLU_RS01485 0.75 -3.9 333,667 + PFLU_RS01485 0.75 -1.8 333,667 + PFLU_RS01485 0.75 -0.8 333,667 + PFLU_RS01485 0.75 -3.0 333,667 + PFLU_RS01485 0.75 -2.5 333,667 + PFLU_RS01485 0.75 -3.7 333,667 + PFLU_RS01485 0.75 -0.3 333,667 + PFLU_RS01485 0.75 -0.8 333,668 - PFLU_RS01485 0.75 -2.9 333,668 - PFLU_RS01485 0.75 -1.9 333,668 - PFLU_RS01485 0.75 -1.8 333,668 - PFLU_RS01485 0.75 -3.7 333,668 - PFLU_RS01485 0.75 -1.5 333,668 - PFLU_RS01485 0.75 -1.3 333,668 - PFLU_RS01485 0.75 -2.0 333,668 - PFLU_RS01485 0.75 -0.1 333,668 - PFLU_RS01485 0.75 -2.1 333,668 - PFLU_RS01485 0.75 -0.4 333,668 - PFLU_RS01485 0.75 -1.5 333,700 - PFLU_RS01485 0.78 -0.5 333,700 - PFLU_RS01485 0.78 -1.5 333,701 + PFLU_RS01485 0.78 -2.5 333,702 - PFLU_RS01485 0.78 -1.2 333,846 + -1.6 333,847 - -2.0 333,847 - -0.5 333,847 - -1.4 333,849 + -0.3 333,849 + -2.2 333,850 - -0.3 333,850 - -0.9 333,850 - -1.3 333,855 + -2.9 333,855 + -3.0 333,855 + -2.2 333,855 + -3.5 333,855 + -1.6 333,855 + -1.3 333,856 - -2.9 333,856 - -0.3 333,856 - -1.8 333,856 - -0.4 333,856 - +0.4 333,960 + +1.5 334,046 + -1.2 334,049 + -0.3 334,049 + -0.3 334,050 - +0.3 334,191 - -0.4 334,346 + PFLU_RS01490 0.10 -2.5 334,347 - PFLU_RS01490 0.10 -1.2 334,398 - PFLU_RS01490 0.12 +0.8 334,400 + PFLU_RS01490 0.12 -0.2 334,400 + PFLU_RS01490 0.12 +0.0 334,400 + PFLU_RS01490 0.12 -0.2 334,400 + PFLU_RS01490 0.12 -0.4 334,400 + PFLU_RS01490 0.12 +1.0 334,400 + PFLU_RS01490 0.12 +0.7 334,400 + PFLU_RS01490 0.12 -1.0 334,401 - PFLU_RS01490 0.12 -0.5 334,401 - PFLU_RS01490 0.12 -2.4 334,401 - PFLU_RS01490 0.12 +1.5 334,401 - PFLU_RS01490 0.12 +0.3 334,401 - PFLU_RS01490 0.12 -0.9 334,401 - PFLU_RS01490 0.12 -1.4 334,401 - PFLU_RS01490 0.12 +0.1 334,546 + PFLU_RS01490 0.16 +1.1 334,547 - PFLU_RS01490 0.16 -0.0 334,548 + PFLU_RS01490 0.16 -0.4 334,549 - PFLU_RS01490 0.16 +1.2 334,736 - PFLU_RS01490 0.21 +0.7 334,736 - PFLU_RS01490 0.21 +1.5 334,736 - PFLU_RS01490 0.21 -1.1 334,907 + PFLU_RS01490 0.25 +0.2 334,925 + PFLU_RS01490 0.26 -1.5 334,926 - PFLU_RS01490 0.26 -0.5
Or see this region's nucleotide sequence