Strain Fitness in Pseudomonas sp. S08-1 around OH686_07430

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07415 and OH686_07420 are separated by 71 nucleotidesOH686_07420 and OH686_07425 overlap by 354 nucleotidesOH686_07425 and OH686_07430 overlap by 56 nucleotidesOH686_07430 and OH686_07435 are separated by 95 nucleotides OH686_07415: OH686_07415 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 1,509,098 to 1,509,853 _07415 OH686_07420: OH686_07420 - CDS, at 1,509,925 to 1,510,323 _07420 OH686_07425: OH686_07425 - LysR family transcriptional regulator, regulator for bpeEF and oprC, at 1,509,970 to 1,510,893 _07425 OH686_07430: OH686_07430 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,510,838 to 1,511,725 _07430 OH686_07435: OH686_07435 - hypothetical protein, at 1,511,821 to 1,512,708 _07435 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1 2at 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.860 kb on + strandat 1509.861 kb on - strandat 1509.861 kb on - strandat 1509.861 kb on - strandat 1509.910 kb on - strandat 1509.936 kb on + strandat 1509.937 kb on - strandat 1509.945 kb on + strandat 1510.165 kb on + strandat 1510.165 kb on + strandat 1510.165 kb on + strandat 1510.165 kb on + strandat 1510.481 kb on - strand, within OH686_07425at 1510.481 kb on - strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.484 kb on + strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.485 kb on - strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.543 kb on + strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.544 kb on - strand, within OH686_07425at 1510.651 kb on + strand, within OH686_07425at 1510.651 kb on + strand, within OH686_07425at 1510.651 kb on + strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.652 kb on - strand, within OH686_07425at 1510.677 kb on - strand, within OH686_07425at 1510.677 kb on - strand, within OH686_07425at 1510.742 kb on + strand, within OH686_07425at 1510.742 kb on + strand, within OH686_07425at 1510.742 kb on + strand, within OH686_07425at 1510.742 kb on + strand, within OH686_07425at 1510.743 kb on - strand, within OH686_07425at 1510.743 kb on - strand, within OH686_07425at 1510.743 kb on - strand, within OH686_07425at 1510.753 kb on + strand, within OH686_07425at 1510.754 kb on - strand, within OH686_07425at 1510.754 kb on - strand, within OH686_07425at 1510.754 kb on - strand, within OH686_07425at 1510.850 kb on + strandat 1510.850 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.859 kb on - strandat 1510.859 kb on - strandat 1510.859 kb on - strandat 1511.088 kb on + strand, within OH686_07430at 1511.088 kb on + strand, within OH686_07430at 1511.088 kb on + strand, within OH686_07430at 1511.088 kb on + strand, within OH686_07430at 1511.088 kb on + strand, within OH686_07430at 1511.088 kb on + strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.089 kb on - strand, within OH686_07430at 1511.254 kb on + strand, within OH686_07430at 1511.255 kb on - strand, within OH686_07430at 1511.577 kb on - strand, within OH686_07430at 1511.627 kb on + strand, within OH686_07430at 1511.627 kb on + strand, within OH686_07430at 1511.627 kb on + strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.628 kb on - strand, within OH686_07430at 1511.757 kb on + strandat 1511.784 kb on + strandat 1511.785 kb on - strandat 1511.790 kb on + strandat 1511.790 kb on + strandat 1511.790 kb on + strandat 1511.791 kb on - strandat 1511.791 kb on - strandat 1511.791 kb on - strandat 1511.791 kb on - strandat 1512.011 kb on + strand, within OH686_07435at 1512.011 kb on + strand, within OH686_07435at 1512.012 kb on - strand, within OH686_07435at 1512.012 kb on - strand, within OH686_07435at 1512.074 kb on + strand, within OH686_07435at 1512.075 kb on - strand, within OH686_07435at 1512.075 kb on - strand, within OH686_07435at 1512.075 kb on - strand, within OH686_07435at 1512.352 kb on + strand, within OH686_07435at 1512.352 kb on + strand, within OH686_07435at 1512.353 kb on - strand, within OH686_07435at 1512.353 kb on - strand, within OH686_07435at 1512.368 kb on + strand, within OH686_07435at 1512.368 kb on + strand, within OH686_07435at 1512.368 kb on + strand, within OH686_07435at 1512.369 kb on - strand, within OH686_07435at 1512.374 kb on + strand, within OH686_07435at 1512.467 kb on + strand, within OH686_07435at 1512.468 kb on - strand, within OH686_07435at 1512.468 kb on - strand, within OH686_07435at 1512.468 kb on - strand, within OH686_07435at 1512.468 kb on - strand, within OH686_07435at 1512.530 kb on + strand, within OH686_07435at 1512.572 kb on + strand, within OH686_07435at 1512.572 kb on + strand, within OH686_07435at 1512.573 kb on - strand, within OH686_07435at 1512.573 kb on - strand, within OH686_07435at 1512.573 kb on - strand, within OH686_07435at 1512.573 kb on - strand, within OH686_07435at 1512.573 kb on - strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.610 kb on + strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.611 kb on - strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.614 kb on + strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435at 1512.615 kb on - strand, within OH686_07435

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,509,860 + -0.5
1,509,860 + -1.5
1,509,860 + +0.9
1,509,860 + +0.7
1,509,860 + +1.2
1,509,860 + +1.1
1,509,860 + -0.7
1,509,861 - +0.8
1,509,861 - +0.1
1,509,861 - -1.9
1,509,910 - +0.1
1,509,936 + -0.7
1,509,937 - -0.1
1,509,945 + -1.3
1,510,165 + +0.2
1,510,165 + -0.2
1,510,165 + -2.6
1,510,165 + -0.4
1,510,481 - OH686_07425 0.55 -0.1
1,510,481 - OH686_07425 0.55 +0.5
1,510,484 + OH686_07425 0.56 -1.1
1,510,484 + OH686_07425 0.56 +0.3
1,510,484 + OH686_07425 0.56 +0.2
1,510,484 + OH686_07425 0.56 -1.8
1,510,484 + OH686_07425 0.56 -0.4
1,510,484 + OH686_07425 0.56 -1.1
1,510,484 + OH686_07425 0.56 +0.1
1,510,484 + OH686_07425 0.56 -0.3
1,510,484 + OH686_07425 0.56 +0.4
1,510,484 + OH686_07425 0.56 +0.1
1,510,484 + OH686_07425 0.56 -1.3
1,510,484 + OH686_07425 0.56 -0.4
1,510,484 + OH686_07425 0.56 +1.1
1,510,484 + OH686_07425 0.56 -0.2
1,510,484 + OH686_07425 0.56 -0.9
1,510,484 + OH686_07425 0.56 -0.1
1,510,484 + OH686_07425 0.56 +0.2
1,510,484 + OH686_07425 0.56 +0.1
1,510,484 + OH686_07425 0.56 -0.4
1,510,484 + OH686_07425 0.56 -0.1
1,510,484 + OH686_07425 0.56 -1.9
1,510,484 + OH686_07425 0.56 +0.6
1,510,484 + OH686_07425 0.56 +1.4
1,510,484 + OH686_07425 0.56 +0.5
1,510,484 + OH686_07425 0.56 -0.3
1,510,485 - OH686_07425 0.56 -0.9
1,510,485 - OH686_07425 0.56 +1.2
1,510,485 - OH686_07425 0.56 -0.1
1,510,485 - OH686_07425 0.56 -0.4
1,510,485 - OH686_07425 0.56 -0.3
1,510,485 - OH686_07425 0.56 -0.6
1,510,485 - OH686_07425 0.56 +1.1
1,510,485 - OH686_07425 0.56 -0.1
1,510,485 - OH686_07425 0.56 -1.4
1,510,485 - OH686_07425 0.56 +0.0
1,510,485 - OH686_07425 0.56 -1.0
1,510,485 - OH686_07425 0.56 +0.3
1,510,485 - OH686_07425 0.56 -0.0
1,510,485 - OH686_07425 0.56 +0.4
1,510,485 - OH686_07425 0.56 -1.2
1,510,485 - OH686_07425 0.56 -0.8
1,510,485 - OH686_07425 0.56 -0.0
1,510,485 - OH686_07425 0.56 -0.0
1,510,543 + OH686_07425 0.62 -0.7
1,510,543 + OH686_07425 0.62 +0.6
1,510,543 + OH686_07425 0.62 +1.1
1,510,543 + OH686_07425 0.62 -0.1
1,510,543 + OH686_07425 0.62 -0.6
1,510,543 + OH686_07425 0.62 -0.8
1,510,543 + OH686_07425 0.62 -0.4
1,510,543 + OH686_07425 0.62 -0.3
1,510,543 + OH686_07425 0.62 +0.1
1,510,543 + OH686_07425 0.62 -1.2
1,510,544 - OH686_07425 0.62 -0.4
1,510,544 - OH686_07425 0.62 -0.4
1,510,544 - OH686_07425 0.62 +0.2
1,510,544 - OH686_07425 0.62 +0.5
1,510,544 - OH686_07425 0.62 -0.8
1,510,544 - OH686_07425 0.62 -0.9
1,510,544 - OH686_07425 0.62 +0.0
1,510,544 - OH686_07425 0.62 +0.1
1,510,544 - OH686_07425 0.62 -0.3
1,510,544 - OH686_07425 0.62 -0.9
1,510,544 - OH686_07425 0.62 +0.2
1,510,651 + OH686_07425 0.74 +0.8
1,510,651 + OH686_07425 0.74 -0.8
1,510,651 + OH686_07425 0.74 +0.2
1,510,652 - OH686_07425 0.74 +1.1
1,510,652 - OH686_07425 0.74 -1.9
1,510,652 - OH686_07425 0.74 -0.2
1,510,652 - OH686_07425 0.74 -2.3
1,510,652 - OH686_07425 0.74 +1.0
1,510,652 - OH686_07425 0.74 +0.1
1,510,652 - OH686_07425 0.74 +0.6
1,510,677 - OH686_07425 0.77 -1.1
1,510,677 - OH686_07425 0.77 +0.5
1,510,742 + OH686_07425 0.84 +0.5
1,510,742 + OH686_07425 0.84 -1.1
1,510,742 + OH686_07425 0.84 -2.3
1,510,742 + OH686_07425 0.84 +0.1
1,510,743 - OH686_07425 0.84 +0.2
1,510,743 - OH686_07425 0.84 -0.0
1,510,743 - OH686_07425 0.84 -0.2
1,510,753 + OH686_07425 0.85 -0.3
1,510,754 - OH686_07425 0.85 -0.0
1,510,754 - OH686_07425 0.85 +0.2
1,510,754 - OH686_07425 0.85 +0.3
1,510,850 + -0.4
1,510,850 + -0.8
1,510,858 + +0.0
1,510,858 + -0.0
1,510,858 + +1.6
1,510,858 + -1.5
1,510,858 + -0.2
1,510,859 - -0.2
1,510,859 - +0.2
1,510,859 - -0.0
1,511,088 + OH686_07430 0.28 -0.4
1,511,088 + OH686_07430 0.28 -1.0
1,511,088 + OH686_07430 0.28 -2.2
1,511,088 + OH686_07430 0.28 -0.1
1,511,088 + OH686_07430 0.28 +0.2
1,511,088 + OH686_07430 0.28 +0.4
1,511,089 - OH686_07430 0.28 -0.1
1,511,089 - OH686_07430 0.28 +0.5
1,511,089 - OH686_07430 0.28 +0.9
1,511,089 - OH686_07430 0.28 -0.2
1,511,089 - OH686_07430 0.28 +1.0
1,511,089 - OH686_07430 0.28 +0.2
1,511,089 - OH686_07430 0.28 +0.4
1,511,089 - OH686_07430 0.28 +0.3
1,511,254 + OH686_07430 0.47 -0.2
1,511,255 - OH686_07430 0.47 +0.3
1,511,577 - OH686_07430 0.83 -0.9
1,511,627 + OH686_07430 0.89 -0.2
1,511,627 + OH686_07430 0.89 -0.4
1,511,627 + OH686_07430 0.89 +0.5
1,511,628 - OH686_07430 0.89 +0.3
1,511,628 - OH686_07430 0.89 -0.4
1,511,628 - OH686_07430 0.89 +2.0
1,511,628 - OH686_07430 0.89 -0.5
1,511,628 - OH686_07430 0.89 +0.0
1,511,628 - OH686_07430 0.89 +0.3
1,511,628 - OH686_07430 0.89 +1.1
1,511,628 - OH686_07430 0.89 +0.1
1,511,757 + +2.3
1,511,784 + -0.5
1,511,785 - +0.6
1,511,790 + +0.6
1,511,790 + -0.6
1,511,790 + -0.3
1,511,791 - +0.1
1,511,791 - -0.9
1,511,791 - -0.4
1,511,791 - +0.3
1,512,011 + OH686_07435 0.21 +0.0
1,512,011 + OH686_07435 0.21 +0.4
1,512,012 - OH686_07435 0.22 +0.1
1,512,012 - OH686_07435 0.22 +0.1
1,512,074 + OH686_07435 0.28 -0.5
1,512,075 - OH686_07435 0.29 +0.2
1,512,075 - OH686_07435 0.29 +0.6
1,512,075 - OH686_07435 0.29 +0.1
1,512,352 + OH686_07435 0.60 +0.1
1,512,352 + OH686_07435 0.60 +0.6
1,512,353 - OH686_07435 0.60 -1.2
1,512,353 - OH686_07435 0.60 +0.6
1,512,368 + OH686_07435 0.62 -0.5
1,512,368 + OH686_07435 0.62 -1.1
1,512,368 + OH686_07435 0.62 +0.6
1,512,369 - OH686_07435 0.62 -0.2
1,512,374 + OH686_07435 0.62 -0.2
1,512,467 + OH686_07435 0.73 -0.8
1,512,468 - OH686_07435 0.73 +1.6
1,512,468 - OH686_07435 0.73 -0.7
1,512,468 - OH686_07435 0.73 +0.8
1,512,468 - OH686_07435 0.73 +0.5
1,512,530 + OH686_07435 0.80 +0.3
1,512,572 + OH686_07435 0.85 +0.3
1,512,572 + OH686_07435 0.85 -0.9
1,512,573 - OH686_07435 0.85 -0.1
1,512,573 - OH686_07435 0.85 +0.0
1,512,573 - OH686_07435 0.85 -1.0
1,512,573 - OH686_07435 0.85 +0.0
1,512,573 - OH686_07435 0.85 -0.8
1,512,610 + OH686_07435 0.89 -0.8
1,512,610 + OH686_07435 0.89 +0.1
1,512,610 + OH686_07435 0.89 -0.9
1,512,610 + OH686_07435 0.89 +0.4
1,512,610 + OH686_07435 0.89 -0.2
1,512,610 + OH686_07435 0.89 +0.6
1,512,610 + OH686_07435 0.89 -0.8
1,512,611 - OH686_07435 0.89 -0.6
1,512,611 - OH686_07435 0.89 +0.2
1,512,611 - OH686_07435 0.89 +0.3
1,512,611 - OH686_07435 0.89 -1.0
1,512,611 - OH686_07435 0.89 -0.4
1,512,611 - OH686_07435 0.89 -0.2
1,512,611 - OH686_07435 0.89 -0.4
1,512,611 - OH686_07435 0.89 -0.5
1,512,611 - OH686_07435 0.89 -0.0
1,512,614 + OH686_07435 0.89 -0.4
1,512,614 + OH686_07435 0.89 +0.2
1,512,614 + OH686_07435 0.89 -0.4
1,512,614 + OH686_07435 0.89 +0.4
1,512,614 + OH686_07435 0.89 -2.7
1,512,614 + OH686_07435 0.89 -0.3
1,512,614 + OH686_07435 0.89 -0.5
1,512,614 + OH686_07435 0.89 +0.2
1,512,614 + OH686_07435 0.89 +0.1
1,512,614 + OH686_07435 0.89 +0.4
1,512,614 + OH686_07435 0.89 +0.2
1,512,614 + OH686_07435 0.89 +0.5
1,512,614 + OH686_07435 0.89 -0.1
1,512,614 + OH686_07435 0.89 -0.8
1,512,614 + OH686_07435 0.89 -0.0
1,512,614 + OH686_07435 0.89 -0.5
1,512,614 + OH686_07435 0.89 +0.5
1,512,615 - OH686_07435 0.89 +0.4
1,512,615 - OH686_07435 0.89 -1.1
1,512,615 - OH686_07435 0.89 -1.5
1,512,615 - OH686_07435 0.89 -0.0
1,512,615 - OH686_07435 0.89 -1.0
1,512,615 - OH686_07435 0.89 +0.3

Or see this region's nucleotide sequence