Strain Fitness in Pseudomonas sp. S08-1 around OH686_01495

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01490 and OH686_01495 overlap by 14 nucleotidesOH686_01495 and OH686_01500 are separated by 78 nucleotidesOH686_01500 and OH686_01505 are separated by 13 nucleotides OH686_01490: OH686_01490 - Biotin carboxylase , at 325,346 to 326,458 _01490 OH686_01495: OH686_01495 - Prolyl oligopeptidase family protein, at 326,445 to 327,215 _01495 OH686_01500: OH686_01500 - hypothetical protein, at 327,294 to 327,797 _01500 OH686_01505: OH686_01505 - Cytochrome d ubiquinol oxidase subunit I , at 327,811 to 329,214 _01505 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 325.514 kb on + strand, within OH686_01490at 325.514 kb on + strand, within OH686_01490at 325.514 kb on + strand, within OH686_01490at 325.514 kb on + strand, within OH686_01490at 325.514 kb on + strand, within OH686_01490at 325.514 kb on + strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.515 kb on - strand, within OH686_01490at 325.517 kb on + strand, within OH686_01490at 325.517 kb on + strand, within OH686_01490at 325.517 kb on + strand, within OH686_01490at 325.518 kb on - strand, within OH686_01490at 325.518 kb on - strand, within OH686_01490at 325.518 kb on - strand, within OH686_01490at 325.518 kb on - strand, within OH686_01490at 325.521 kb on + strand, within OH686_01490at 325.521 kb on + strand, within OH686_01490at 325.521 kb on + strand, within OH686_01490at 325.521 kb on + strand, within OH686_01490at 325.521 kb on + strand, within OH686_01490at 325.522 kb on - strand, within OH686_01490at 325.522 kb on - strand, within OH686_01490at 325.522 kb on - strand, within OH686_01490at 325.522 kb on - strand, within OH686_01490at 325.522 kb on - strand, within OH686_01490at 325.660 kb on + strand, within OH686_01490at 325.661 kb on - strand, within OH686_01490at 325.735 kb on - strand, within OH686_01490at 325.985 kb on + strand, within OH686_01490at 325.985 kb on + strand, within OH686_01490at 325.985 kb on + strand, within OH686_01490at 325.985 kb on + strand, within OH686_01490at 325.986 kb on - strand, within OH686_01490at 325.986 kb on - strand, within OH686_01490at 325.986 kb on - strand, within OH686_01490at 325.988 kb on + strand, within OH686_01490at 325.989 kb on - strand, within OH686_01490at 326.018 kb on - strand, within OH686_01490at 326.033 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.053 kb on + strand, within OH686_01490at 326.054 kb on - strand, within OH686_01490at 326.054 kb on - strand, within OH686_01490at 326.054 kb on - strand, within OH686_01490at 326.054 kb on - strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.055 kb on + strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.056 kb on - strand, within OH686_01490at 326.069 kb on + strand, within OH686_01490at 326.070 kb on - strand, within OH686_01490at 326.135 kb on + strand, within OH686_01490at 326.136 kb on - strand, within OH686_01490at 326.186 kb on + strand, within OH686_01490at 326.186 kb on + strand, within OH686_01490at 326.186 kb on + strand, within OH686_01490at 326.186 kb on + strand, within OH686_01490at 326.186 kb on + strand, within OH686_01490at 326.187 kb on - strand, within OH686_01490at 326.187 kb on - strand, within OH686_01490at 326.187 kb on - strand, within OH686_01490at 326.187 kb on - strand, within OH686_01490at 326.349 kb on - strandat 326.349 kb on - strandat 326.387 kb on + strandat 326.387 kb on + strandat 326.387 kb on + strandat 326.387 kb on + strandat 326.387 kb on + strandat 326.388 kb on - strandat 326.388 kb on - strandat 326.388 kb on - strandat 326.388 kb on - strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.426 kb on + strandat 326.427 kb on - strandat 326.427 kb on - strandat 326.427 kb on - strandat 326.427 kb on - strandat 326.427 kb on - strandat 326.427 kb on - strandat 326.698 kb on + strand, within OH686_01495at 326.698 kb on + strand, within OH686_01495at 326.698 kb on + strand, within OH686_01495at 326.698 kb on + strand, within OH686_01495at 326.699 kb on - strand, within OH686_01495at 326.699 kb on - strand, within OH686_01495at 326.710 kb on - strand, within OH686_01495at 326.772 kb on + strand, within OH686_01495at 326.773 kb on - strand, within OH686_01495at 326.781 kb on + strand, within OH686_01495at 326.848 kb on - strand, within OH686_01495at 326.848 kb on - strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.977 kb on + strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 326.978 kb on - strand, within OH686_01495at 327.034 kb on - strand, within OH686_01495at 327.126 kb on + strand, within OH686_01495at 327.126 kb on + strand, within OH686_01495at 327.126 kb on + strand, within OH686_01495at 327.127 kb on - strand, within OH686_01495at 327.127 kb on - strand, within OH686_01495at 327.127 kb on - strand, within OH686_01495at 327.128 kb on + strand, within OH686_01495at 327.128 kb on + strand, within OH686_01495at 327.128 kb on + strand, within OH686_01495at 327.128 kb on + strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.129 kb on - strand, within OH686_01495at 327.186 kb on + strandat 327.207 kb on + strandat 327.208 kb on - strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.264 kb on + strandat 327.265 kb on - strandat 327.265 kb on - strandat 327.325 kb on + strandat 327.901 kb on + strandat 327.901 kb on + strandat 327.902 kb on - strandat 327.902 kb on - strandat 327.902 kb on - strandat 327.902 kb on - strandat 327.902 kb on - strandat 327.902 kb on - strandat 327.949 kb on + strandat 327.950 kb on - strandat 327.962 kb on - strand, within OH686_01505at 327.962 kb on - strand, within OH686_01505at 327.962 kb on - strand, within OH686_01505at 328.030 kb on + strand, within OH686_01505at 328.099 kb on + strand, within OH686_01505at 328.099 kb on + strand, within OH686_01505at 328.099 kb on + strand, within OH686_01505at 328.099 kb on + strand, within OH686_01505at 328.100 kb on - strand, within OH686_01505

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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325,514 + OH686_01490 0.15 -1.5
325,514 + OH686_01490 0.15 -0.6
325,514 + OH686_01490 0.15 -0.0
325,514 + OH686_01490 0.15 +0.3
325,514 + OH686_01490 0.15 +0.3
325,514 + OH686_01490 0.15 +0.2
325,515 - OH686_01490 0.15 +0.0
325,515 - OH686_01490 0.15 -0.5
325,515 - OH686_01490 0.15 -0.7
325,515 - OH686_01490 0.15 -1.3
325,515 - OH686_01490 0.15 +0.2
325,515 - OH686_01490 0.15 -0.1
325,515 - OH686_01490 0.15 -0.5
325,515 - OH686_01490 0.15 -0.9
325,517 + OH686_01490 0.15 +0.2
325,517 + OH686_01490 0.15 -0.1
325,517 + OH686_01490 0.15 -1.1
325,518 - OH686_01490 0.15 -0.2
325,518 - OH686_01490 0.15 +1.5
325,518 - OH686_01490 0.15 -0.2
325,518 - OH686_01490 0.15 -0.7
325,521 + OH686_01490 0.16 -0.1
325,521 + OH686_01490 0.16 +0.1
325,521 + OH686_01490 0.16 +0.2
325,521 + OH686_01490 0.16 +0.1
325,521 + OH686_01490 0.16 +0.3
325,522 - OH686_01490 0.16 +1.6
325,522 - OH686_01490 0.16 -0.2
325,522 - OH686_01490 0.16 -0.2
325,522 - OH686_01490 0.16 -0.1
325,522 - OH686_01490 0.16 -2.3
325,660 + OH686_01490 0.28 -0.1
325,661 - OH686_01490 0.28 +1.0
325,735 - OH686_01490 0.35 -0.4
325,985 + OH686_01490 0.57 -0.6
325,985 + OH686_01490 0.57 -0.1
325,985 + OH686_01490 0.57 +0.2
325,985 + OH686_01490 0.57 +0.4
325,986 - OH686_01490 0.58 -0.8
325,986 - OH686_01490 0.58 +0.4
325,986 - OH686_01490 0.58 -0.1
325,988 + OH686_01490 0.58 -0.7
325,989 - OH686_01490 0.58 +0.5
326,018 - OH686_01490 0.60 -0.0
326,033 + OH686_01490 0.62 -0.0
326,053 + OH686_01490 0.64 -0.5
326,053 + OH686_01490 0.64 +0.3
326,053 + OH686_01490 0.64 +0.2
326,053 + OH686_01490 0.64 -0.6
326,053 + OH686_01490 0.64 -0.6
326,053 + OH686_01490 0.64 +0.0
326,053 + OH686_01490 0.64 -0.3
326,053 + OH686_01490 0.64 -0.3
326,053 + OH686_01490 0.64 -1.1
326,053 + OH686_01490 0.64 +0.3
326,053 + OH686_01490 0.64 -0.0
326,054 - OH686_01490 0.64 -1.7
326,054 - OH686_01490 0.64 +0.4
326,054 - OH686_01490 0.64 -0.1
326,054 - OH686_01490 0.64 -0.9
326,055 + OH686_01490 0.64 -0.2
326,055 + OH686_01490 0.64 -1.2
326,055 + OH686_01490 0.64 +0.2
326,055 + OH686_01490 0.64 -1.8
326,055 + OH686_01490 0.64 -0.1
326,055 + OH686_01490 0.64 -0.6
326,055 + OH686_01490 0.64 +0.3
326,055 + OH686_01490 0.64 -0.7
326,055 + OH686_01490 0.64 -1.4
326,055 + OH686_01490 0.64 +0.2
326,056 - OH686_01490 0.64 +1.6
326,056 - OH686_01490 0.64 -0.9
326,056 - OH686_01490 0.64 -0.1
326,056 - OH686_01490 0.64 +1.6
326,056 - OH686_01490 0.64 -0.2
326,056 - OH686_01490 0.64 +2.0
326,056 - OH686_01490 0.64 -0.6
326,056 - OH686_01490 0.64 -0.2
326,056 - OH686_01490 0.64 +0.1
326,069 + OH686_01490 0.65 +1.1
326,070 - OH686_01490 0.65 -0.3
326,135 + OH686_01490 0.71 -0.0
326,136 - OH686_01490 0.71 -0.0
326,186 + OH686_01490 0.75 -0.0
326,186 + OH686_01490 0.75 -0.1
326,186 + OH686_01490 0.75 +0.2
326,186 + OH686_01490 0.75 -0.2
326,186 + OH686_01490 0.75 +0.4
326,187 - OH686_01490 0.76 -0.4
326,187 - OH686_01490 0.76 -0.4
326,187 - OH686_01490 0.76 -0.7
326,187 - OH686_01490 0.76 -0.4
326,349 - +0.2
326,349 - +1.5
326,387 + -0.4
326,387 + +0.4
326,387 + -0.6
326,387 + -0.5
326,387 + -0.5
326,388 - -1.0
326,388 - +0.3
326,388 - -0.1
326,388 - -0.6
326,426 + -1.0
326,426 + -1.7
326,426 + -0.5
326,426 + +0.8
326,426 + +0.0
326,426 + +0.9
326,426 + -0.6
326,426 + +1.4
326,427 - +1.7
326,427 - -0.3
326,427 - -0.3
326,427 - +0.2
326,427 - +0.8
326,427 - -1.7
326,698 + OH686_01495 0.33 -0.7
326,698 + OH686_01495 0.33 -0.4
326,698 + OH686_01495 0.33 +0.1
326,698 + OH686_01495 0.33 -0.1
326,699 - OH686_01495 0.33 -0.2
326,699 - OH686_01495 0.33 +0.0
326,710 - OH686_01495 0.34 +1.4
326,772 + OH686_01495 0.42 +0.3
326,773 - OH686_01495 0.43 -0.4
326,781 + OH686_01495 0.44 -0.1
326,848 - OH686_01495 0.52 +0.4
326,848 - OH686_01495 0.52 +0.3
326,977 + OH686_01495 0.69 -0.2
326,977 + OH686_01495 0.69 +0.9
326,977 + OH686_01495 0.69 -1.2
326,977 + OH686_01495 0.69 +0.4
326,977 + OH686_01495 0.69 -0.1
326,977 + OH686_01495 0.69 +1.0
326,977 + OH686_01495 0.69 -0.7
326,977 + OH686_01495 0.69 -0.1
326,977 + OH686_01495 0.69 +0.5
326,978 - OH686_01495 0.69 +0.2
326,978 - OH686_01495 0.69 -0.3
326,978 - OH686_01495 0.69 -0.1
326,978 - OH686_01495 0.69 -1.4
326,978 - OH686_01495 0.69 +0.9
326,978 - OH686_01495 0.69 -0.3
327,034 - OH686_01495 0.76 -0.5
327,126 + OH686_01495 0.88 +0.3
327,126 + OH686_01495 0.88 -0.2
327,126 + OH686_01495 0.88 +0.5
327,127 - OH686_01495 0.88 -0.3
327,127 - OH686_01495 0.88 +0.1
327,127 - OH686_01495 0.88 +1.6
327,128 + OH686_01495 0.89 +0.3
327,128 + OH686_01495 0.89 -0.4
327,128 + OH686_01495 0.89 -1.6
327,128 + OH686_01495 0.89 -0.7
327,129 - OH686_01495 0.89 -0.9
327,129 - OH686_01495 0.89 -0.3
327,129 - OH686_01495 0.89 +0.2
327,129 - OH686_01495 0.89 -1.6
327,129 - OH686_01495 0.89 +0.2
327,129 - OH686_01495 0.89 +0.3
327,186 + -0.2
327,207 + -0.2
327,208 - +0.1
327,264 + -0.2
327,264 + +0.4
327,264 + -1.0
327,264 + -0.0
327,264 + +1.4
327,264 + -0.3
327,264 + +0.4
327,264 + +0.4
327,264 + -0.3
327,264 + -0.2
327,264 + -0.3
327,264 + -0.2
327,264 + -0.2
327,265 - -0.6
327,265 - +1.0
327,325 + -0.1
327,901 + -1.4
327,901 + -0.6
327,902 - -0.2
327,902 - -1.2
327,902 - -0.2
327,902 - +0.7
327,902 - +0.0
327,902 - +1.5
327,949 + +0.3
327,950 - -0.7
327,962 - OH686_01505 0.11 -0.2
327,962 - OH686_01505 0.11 -1.0
327,962 - OH686_01505 0.11 -1.6
328,030 + OH686_01505 0.16 +0.4
328,099 + OH686_01505 0.21 -0.5
328,099 + OH686_01505 0.21 -0.7
328,099 + OH686_01505 0.21 +0.4
328,099 + OH686_01505 0.21 +0.1
328,100 - OH686_01505 0.21 -0.6

Or see this region's nucleotide sequence