Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04295 and PS417_04300 are separated by 150 nucleotides PS417_04300 and PS417_04305 overlap by 8 nucleotides PS417_04305 and PS417_04310 are separated by 27 nucleotides PS417_04310 and PS417_04315 are separated by 1 nucleotides
PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052
_04295
PS417_04300: PS417_04300 - FagA protein, at 965,203 to 965,598
_04300
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423
_04310
PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036
_04315
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 964.608 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.861 kb on + strand, within PS417_04295 at 964.862 kb on - strand, within PS417_04295 at 965.074 kb on + strand at 965.308 kb on + strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.596 kb on + strand at 965.596 kb on + strand at 965.596 kb on + strand at 965.597 kb on - strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.891 kb on - strand, within PS417_04305 at 966.225 kb on + strand, within PS417_04305 at 966.965 kb on + strand at 967.039 kb on + strand, within PS417_04310 at 967.039 kb on + strand, within PS417_04310 at 967.040 kb on - strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.074 kb on - strand, within PS417_04310 at 967.424 kb on + strand at 967.425 kb on - strand at 967.431 kb on + strand at 967.431 kb on + strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.433 kb on + strand at 967.433 kb on + strand at 967.458 kb on + strand at 967.478 kb on + strand at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.935 kb on + strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.945 kb on - strand, within PS417_04315 at 967.966 kb on - strand, within PS417_04315
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 964,608 + PS417_04295 0.67 +0.2 964,678 + PS417_04295 0.72 -0.2 964,678 + PS417_04295 0.72 -0.6 964,679 - PS417_04295 0.72 -0.0 964,679 - PS417_04295 0.72 -0.1 964,679 - PS417_04295 0.72 -0.0 964,679 - PS417_04295 0.72 +0.7 964,693 + PS417_04295 0.73 -0.0 964,693 + PS417_04295 0.73 +0.6 964,694 - PS417_04295 0.73 +0.7 964,694 - PS417_04295 0.73 +0.3 964,694 - PS417_04295 0.73 +0.5 964,861 + PS417_04295 0.86 +2.0 964,862 - PS417_04295 0.86 +0.5 965,074 + -0.5 965,308 + PS417_04300 0.27 -0.1 965,309 - PS417_04300 0.27 +0.3 965,309 - PS417_04300 0.27 -1.3 965,309 - PS417_04300 0.27 -0.9 965,596 + +1.2 965,596 + +0.7 965,596 + +0.7 965,597 - -0.1 965,654 + +1.3 965,654 + -0.4 965,654 + -1.3 965,654 + +0.5 965,655 - +0.3 965,655 - +0.1 965,655 - +0.1 965,891 - PS417_04305 0.22 -0.3 966,225 + PS417_04305 0.46 +1.7 966,965 + -0.2 967,039 + PS417_04310 0.10 -0.2 967,039 + PS417_04310 0.10 -0.4 967,040 - PS417_04310 0.10 -0.3 967,073 + PS417_04310 0.18 +0.4 967,073 + PS417_04310 0.18 +0.6 967,074 - PS417_04310 0.18 +0.1 967,424 + -0.3 967,425 - -0.0 967,431 + -0.2 967,431 + +0.0 967,432 - +0.5 967,432 - +0.0 967,432 - +0.6 967,433 + +0.6 967,433 + -0.8 967,458 + -0.7 967,478 + -0.1 967,507 - PS417_04315 0.13 +0.3 967,507 - PS417_04315 0.13 -2.1 967,507 - PS417_04315 0.13 -0.7 967,527 + PS417_04315 0.17 +0.4 967,527 + PS417_04315 0.17 -0.2 967,935 + PS417_04315 0.83 +0.6 967,936 - PS417_04315 0.83 -0.9 967,936 - PS417_04315 0.83 +0.8 967,945 - PS417_04315 0.85 -0.4 967,966 - PS417_04315 0.88 +0.2
Or see this region's nucleotide sequence