Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2988 and Echvi_2989 are separated by 71 nucleotides Echvi_2989 and Echvi_2990 are separated by 5 nucleotides
Echvi_2988: Echvi_2988 - tryptophanyl-tRNA synthetase, at 3,571,298 to 3,572,272
_2988
Echvi_2989: Echvi_2989 - Protein of unknown function (DUF1573)., at 3,572,344 to 3,573,441
_2989
Echvi_2990: Echvi_2990 - Acyl-CoA dehydrogenases, at 3,573,447 to 3,574,655
_2990
Position (kb)
3572
3573
3574 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3572.334 kb on - strand at 3572.364 kb on - strand at 3572.369 kb on + strand at 3572.369 kb on + strand at 3572.369 kb on + strand at 3572.370 kb on - strand at 3572.396 kb on + strand at 3572.399 kb on + strand at 3572.399 kb on + strand at 3572.568 kb on + strand, within Echvi_2989 at 3572.605 kb on - strand, within Echvi_2989 at 3572.718 kb on - strand, within Echvi_2989 at 3572.718 kb on - strand, within Echvi_2989 at 3572.718 kb on - strand, within Echvi_2989 at 3572.758 kb on + strand, within Echvi_2989 at 3572.758 kb on + strand, within Echvi_2989 at 3572.767 kb on + strand, within Echvi_2989 at 3572.768 kb on - strand, within Echvi_2989 at 3572.768 kb on - strand, within Echvi_2989 at 3572.769 kb on + strand, within Echvi_2989 at 3572.770 kb on - strand, within Echvi_2989 at 3572.770 kb on - strand, within Echvi_2989 at 3572.790 kb on + strand, within Echvi_2989 at 3572.796 kb on + strand, within Echvi_2989 at 3572.803 kb on - strand, within Echvi_2989 at 3572.820 kb on - strand, within Echvi_2989 at 3572.820 kb on - strand, within Echvi_2989 at 3572.820 kb on - strand, within Echvi_2989 at 3572.820 kb on - strand, within Echvi_2989 at 3572.820 kb on - strand, within Echvi_2989 at 3572.898 kb on + strand, within Echvi_2989 at 3572.899 kb on - strand, within Echvi_2989 at 3572.925 kb on + strand, within Echvi_2989 at 3572.952 kb on + strand, within Echvi_2989 at 3573.006 kb on - strand, within Echvi_2989 at 3573.034 kb on - strand, within Echvi_2989 at 3573.094 kb on + strand, within Echvi_2989 at 3573.146 kb on + strand, within Echvi_2989 at 3573.207 kb on + strand, within Echvi_2989 at 3573.208 kb on - strand, within Echvi_2989 at 3573.208 kb on - strand, within Echvi_2989 at 3573.208 kb on - strand, within Echvi_2989 at 3573.238 kb on - strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.270 kb on + strand, within Echvi_2989 at 3573.271 kb on - strand, within Echvi_2989 at 3573.271 kb on - strand, within Echvi_2989 at 3573.292 kb on + strand, within Echvi_2989 at 3573.366 kb on + strand at 3573.367 kb on - strand at 3573.398 kb on + strand at 3573.423 kb on + strand at 3573.465 kb on - strand at 3573.517 kb on + strand at 3573.517 kb on + strand at 3573.518 kb on - strand at 3573.545 kb on + strand at 3573.546 kb on - strand at 3573.635 kb on + strand, within Echvi_2990 at 3573.636 kb on - strand, within Echvi_2990 at 3573.687 kb on + strand, within Echvi_2990 at 3573.688 kb on - strand, within Echvi_2990 at 3573.696 kb on + strand, within Echvi_2990 at 3573.762 kb on + strand, within Echvi_2990 at 3573.762 kb on + strand, within Echvi_2990 at 3573.762 kb on + strand, within Echvi_2990 at 3573.779 kb on + strand, within Echvi_2990 at 3573.780 kb on - strand, within Echvi_2990 at 3573.829 kb on + strand, within Echvi_2990 at 3573.830 kb on - strand, within Echvi_2990 at 3573.998 kb on + strand, within Echvi_2990 at 3573.999 kb on - strand, within Echvi_2990 at 3573.999 kb on - strand, within Echvi_2990 at 3573.999 kb on - strand, within Echvi_2990 at 3574.020 kb on - strand, within Echvi_2990 at 3574.046 kb on + strand, within Echvi_2990 at 3574.047 kb on - strand, within Echvi_2990 at 3574.047 kb on - strand, within Echvi_2990 at 3574.047 kb on - strand, within Echvi_2990 at 3574.083 kb on + strand, within Echvi_2990 at 3574.083 kb on + strand, within Echvi_2990 at 3574.087 kb on - strand, within Echvi_2990 at 3574.087 kb on - strand, within Echvi_2990 at 3574.093 kb on - strand, within Echvi_2990 at 3574.093 kb on - strand, within Echvi_2990 at 3574.112 kb on + strand, within Echvi_2990 at 3574.137 kb on + strand, within Echvi_2990 at 3574.138 kb on - strand, within Echvi_2990 at 3574.141 kb on - strand, within Echvi_2990 at 3574.144 kb on + strand, within Echvi_2990 at 3574.388 kb on + strand, within Echvi_2990 at 3574.388 kb on + strand, within Echvi_2990 at 3574.389 kb on - strand, within Echvi_2990 at 3574.389 kb on - strand, within Echvi_2990 at 3574.389 kb on - strand, within Echvi_2990 at 3574.390 kb on + strand, within Echvi_2990 at 3574.391 kb on - strand, within Echvi_2990 at 3574.412 kb on - strand, within Echvi_2990 at 3574.412 kb on - strand, within Echvi_2990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 3,572,334 - -0.2 3,572,364 - -0.5 3,572,369 + +0.7 3,572,369 + +0.4 3,572,369 + +0.1 3,572,370 - +1.0 3,572,396 + -0.5 3,572,399 + +0.4 3,572,399 + -0.4 3,572,568 + Echvi_2989 0.20 -0.4 3,572,605 - Echvi_2989 0.24 -0.7 3,572,718 - Echvi_2989 0.34 +0.6 3,572,718 - Echvi_2989 0.34 +0.1 3,572,718 - Echvi_2989 0.34 +0.7 3,572,758 + Echvi_2989 0.38 -0.7 3,572,758 + Echvi_2989 0.38 +0.4 3,572,767 + Echvi_2989 0.39 +0.7 3,572,768 - Echvi_2989 0.39 +0.6 3,572,768 - Echvi_2989 0.39 +0.7 3,572,769 + Echvi_2989 0.39 +1.0 3,572,770 - Echvi_2989 0.39 -0.4 3,572,770 - Echvi_2989 0.39 -0.6 3,572,790 + Echvi_2989 0.41 +0.2 3,572,796 + Echvi_2989 0.41 -0.4 3,572,803 - Echvi_2989 0.42 -0.1 3,572,820 - Echvi_2989 0.43 +0.2 3,572,820 - Echvi_2989 0.43 +0.8 3,572,820 - Echvi_2989 0.43 +0.4 3,572,820 - Echvi_2989 0.43 -1.0 3,572,820 - Echvi_2989 0.43 +0.6 3,572,898 + Echvi_2989 0.50 +0.3 3,572,899 - Echvi_2989 0.51 +0.5 3,572,925 + Echvi_2989 0.53 +0.2 3,572,952 + Echvi_2989 0.55 +0.3 3,573,006 - Echvi_2989 0.60 -0.0 3,573,034 - Echvi_2989 0.63 -1.0 3,573,094 + Echvi_2989 0.68 -0.0 3,573,146 + Echvi_2989 0.73 -0.2 3,573,207 + Echvi_2989 0.79 +0.5 3,573,208 - Echvi_2989 0.79 -2.1 3,573,208 - Echvi_2989 0.79 +0.5 3,573,208 - Echvi_2989 0.79 +0.6 3,573,238 - Echvi_2989 0.81 +0.4 3,573,270 + Echvi_2989 0.84 +0.5 3,573,270 + Echvi_2989 0.84 -0.8 3,573,270 + Echvi_2989 0.84 +1.2 3,573,270 + Echvi_2989 0.84 -0.3 3,573,270 + Echvi_2989 0.84 +0.8 3,573,270 + Echvi_2989 0.84 +0.5 3,573,271 - Echvi_2989 0.84 -0.1 3,573,271 - Echvi_2989 0.84 -0.8 3,573,292 + Echvi_2989 0.86 +1.2 3,573,366 + +0.5 3,573,367 - +1.0 3,573,398 + +0.4 3,573,423 + -0.3 3,573,465 - +0.1 3,573,517 + +0.2 3,573,517 + +1.1 3,573,518 - -0.6 3,573,545 + -1.0 3,573,546 - -0.6 3,573,635 + Echvi_2990 0.16 +1.8 3,573,636 - Echvi_2990 0.16 -0.2 3,573,687 + Echvi_2990 0.20 +0.2 3,573,688 - Echvi_2990 0.20 +0.5 3,573,696 + Echvi_2990 0.21 +1.0 3,573,762 + Echvi_2990 0.26 +0.1 3,573,762 + Echvi_2990 0.26 -1.2 3,573,762 + Echvi_2990 0.26 +0.1 3,573,779 + Echvi_2990 0.27 +1.0 3,573,780 - Echvi_2990 0.28 +0.7 3,573,829 + Echvi_2990 0.32 -1.0 3,573,830 - Echvi_2990 0.32 +0.1 3,573,998 + Echvi_2990 0.46 +0.4 3,573,999 - Echvi_2990 0.46 +0.4 3,573,999 - Echvi_2990 0.46 +0.4 3,573,999 - Echvi_2990 0.46 -0.0 3,574,020 - Echvi_2990 0.47 -0.4 3,574,046 + Echvi_2990 0.50 +1.2 3,574,047 - Echvi_2990 0.50 -0.2 3,574,047 - Echvi_2990 0.50 -0.0 3,574,047 - Echvi_2990 0.50 +1.5 3,574,083 + Echvi_2990 0.53 -0.2 3,574,083 + Echvi_2990 0.53 +0.6 3,574,087 - Echvi_2990 0.53 +0.2 3,574,087 - Echvi_2990 0.53 +0.0 3,574,093 - Echvi_2990 0.53 +0.2 3,574,093 - Echvi_2990 0.53 -0.8 3,574,112 + Echvi_2990 0.55 -1.2 3,574,137 + Echvi_2990 0.57 +0.4 3,574,138 - Echvi_2990 0.57 -1.9 3,574,141 - Echvi_2990 0.57 -0.9 3,574,144 + Echvi_2990 0.58 +0.2 3,574,388 + Echvi_2990 0.78 -0.2 3,574,388 + Echvi_2990 0.78 +0.3 3,574,389 - Echvi_2990 0.78 +0.4 3,574,389 - Echvi_2990 0.78 +0.6 3,574,389 - Echvi_2990 0.78 -1.2 3,574,390 + Echvi_2990 0.78 +0.0 3,574,391 - Echvi_2990 0.78 +0.0 3,574,412 - Echvi_2990 0.80 -0.2 3,574,412 - Echvi_2990 0.80 -0.8
Or see this region's nucleotide sequence