Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4362

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4361 and EX28DRAFT_4362 are separated by 34 nucleotidesEX28DRAFT_4362 and EX28DRAFT_4363 are separated by 39 nucleotides EX28DRAFT_4361: EX28DRAFT_4361 - Sugar kinases, ribokinase family, at 26,781 to 27,677 _4361 EX28DRAFT_4362: EX28DRAFT_4362 - transcriptional regulator, DeoR family, at 27,712 to 28,506 _4362 EX28DRAFT_4363: EX28DRAFT_4363 - outer membrane autotransporter barrel domain, at 28,546 to 31,473 _4363 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 26.727 kb on + strandat 26.745 kb on - strandat 26.862 kb on + strandat 26.862 kb on + strandat 26.863 kb on - strandat 27.030 kb on - strand, within EX28DRAFT_4361at 27.109 kb on - strand, within EX28DRAFT_4361at 27.154 kb on + strand, within EX28DRAFT_4361at 27.181 kb on + strand, within EX28DRAFT_4361at 27.408 kb on + strand, within EX28DRAFT_4361at 27.408 kb on + strand, within EX28DRAFT_4361at 27.482 kb on - strand, within EX28DRAFT_4361at 27.629 kb on + strandat 27.631 kb on + strandat 27.783 kb on + strandat 27.988 kb on + strand, within EX28DRAFT_4362at 27.989 kb on - strand, within EX28DRAFT_4362at 28.009 kb on - strand, within EX28DRAFT_4362at 28.066 kb on - strand, within EX28DRAFT_4362at 28.066 kb on - strand, within EX28DRAFT_4362at 28.116 kb on + strand, within EX28DRAFT_4362at 28.116 kb on + strand, within EX28DRAFT_4362at 28.462 kb on - strandat 28.496 kb on - strandat 28.560 kb on - strandat 28.592 kb on + strandat 28.592 kb on + strandat 28.593 kb on - strandat 28.630 kb on + strandat 28.647 kb on + strandat 28.651 kb on - strandat 28.660 kb on + strandat 28.660 kb on + strandat 28.661 kb on - strandat 28.671 kb on + strandat 28.671 kb on + strandat 28.672 kb on - strandat 28.809 kb on + strandat 28.810 kb on - strandat 28.823 kb on + strandat 28.823 kb on + strandat 28.824 kb on - strandat 28.824 kb on - strandat 28.824 kb on - strandat 28.986 kb on + strand, within EX28DRAFT_4363at 29.000 kb on - strand, within EX28DRAFT_4363at 29.000 kb on - strand, within EX28DRAFT_4363at 29.076 kb on + strand, within EX28DRAFT_4363at 29.076 kb on + strand, within EX28DRAFT_4363at 29.076 kb on + strand, within EX28DRAFT_4363at 29.076 kb on + strand, within EX28DRAFT_4363at 29.077 kb on - strand, within EX28DRAFT_4363at 29.077 kb on - strand, within EX28DRAFT_4363at 29.077 kb on - strand, within EX28DRAFT_4363at 29.077 kb on - strand, within EX28DRAFT_4363at 29.078 kb on + strand, within EX28DRAFT_4363at 29.078 kb on + strand, within EX28DRAFT_4363at 29.079 kb on - strand, within EX28DRAFT_4363at 29.079 kb on - strand, within EX28DRAFT_4363at 29.079 kb on - strand, within EX28DRAFT_4363at 29.079 kb on - strand, within EX28DRAFT_4363at 29.079 kb on - strand, within EX28DRAFT_4363at 29.080 kb on + strand, within EX28DRAFT_4363at 29.080 kb on + strand, within EX28DRAFT_4363at 29.080 kb on + strand, within EX28DRAFT_4363at 29.080 kb on + strand, within EX28DRAFT_4363at 29.080 kb on + strand, within EX28DRAFT_4363at 29.081 kb on - strand, within EX28DRAFT_4363at 29.081 kb on - strand, within EX28DRAFT_4363at 29.081 kb on - strand, within EX28DRAFT_4363at 29.081 kb on - strand, within EX28DRAFT_4363at 29.081 kb on - strand, within EX28DRAFT_4363at 29.091 kb on + strand, within EX28DRAFT_4363at 29.099 kb on + strand, within EX28DRAFT_4363at 29.099 kb on + strand, within EX28DRAFT_4363at 29.099 kb on + strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.100 kb on - strand, within EX28DRAFT_4363at 29.103 kb on + strand, within EX28DRAFT_4363at 29.154 kb on + strand, within EX28DRAFT_4363at 29.154 kb on + strand, within EX28DRAFT_4363at 29.154 kb on + strand, within EX28DRAFT_4363at 29.155 kb on - strand, within EX28DRAFT_4363at 29.155 kb on - strand, within EX28DRAFT_4363at 29.307 kb on - strand, within EX28DRAFT_4363at 29.457 kb on + strand, within EX28DRAFT_4363at 29.457 kb on + strand, within EX28DRAFT_4363at 29.458 kb on - strand, within EX28DRAFT_4363at 29.466 kb on + strand, within EX28DRAFT_4363at 29.466 kb on + strand, within EX28DRAFT_4363at 29.467 kb on - strand, within EX28DRAFT_4363at 29.477 kb on + strand, within EX28DRAFT_4363at 29.492 kb on + strand, within EX28DRAFT_4363

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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26,727 + +0.6
26,745 - -0.0
26,862 + -0.0
26,862 + +0.3
26,863 - +0.7
27,030 - EX28DRAFT_4361 0.28 +0.7
27,109 - EX28DRAFT_4361 0.37 -0.5
27,154 + EX28DRAFT_4361 0.42 +0.1
27,181 + EX28DRAFT_4361 0.45 +0.3
27,408 + EX28DRAFT_4361 0.70 +0.5
27,408 + EX28DRAFT_4361 0.70 -0.7
27,482 - EX28DRAFT_4361 0.78 +0.4
27,629 + +0.8
27,631 + +0.6
27,783 + +0.1
27,988 + EX28DRAFT_4362 0.35 -0.3
27,989 - EX28DRAFT_4362 0.35 +0.4
28,009 - EX28DRAFT_4362 0.37 +0.7
28,066 - EX28DRAFT_4362 0.45 +1.3
28,066 - EX28DRAFT_4362 0.45 +1.3
28,116 + EX28DRAFT_4362 0.51 +0.4
28,116 + EX28DRAFT_4362 0.51 -0.8
28,462 - +0.7
28,496 - +0.1
28,560 - +0.7
28,592 + -0.8
28,592 + -0.5
28,593 - +0.4
28,630 + -3.4
28,647 + -1.1
28,651 - +0.3
28,660 + +0.7
28,660 + +0.6
28,661 - +1.1
28,671 + +0.3
28,671 + -2.3
28,672 - -0.6
28,809 + +0.7
28,810 - +0.3
28,823 + -0.0
28,823 + +0.4
28,824 - +0.1
28,824 - +0.6
28,824 - -1.4
28,986 + EX28DRAFT_4363 0.15 +0.3
29,000 - EX28DRAFT_4363 0.16 -0.1
29,000 - EX28DRAFT_4363 0.16 +0.2
29,076 + EX28DRAFT_4363 0.18 +0.0
29,076 + EX28DRAFT_4363 0.18 -0.7
29,076 + EX28DRAFT_4363 0.18 +0.6
29,076 + EX28DRAFT_4363 0.18 +1.1
29,077 - EX28DRAFT_4363 0.18 +0.2
29,077 - EX28DRAFT_4363 0.18 -0.5
29,077 - EX28DRAFT_4363 0.18 -0.1
29,077 - EX28DRAFT_4363 0.18 +0.2
29,078 + EX28DRAFT_4363 0.18 -0.3
29,078 + EX28DRAFT_4363 0.18 +1.0
29,079 - EX28DRAFT_4363 0.18 +0.3
29,079 - EX28DRAFT_4363 0.18 +1.2
29,079 - EX28DRAFT_4363 0.18 +0.9
29,079 - EX28DRAFT_4363 0.18 +3.3
29,079 - EX28DRAFT_4363 0.18 -1.0
29,080 + EX28DRAFT_4363 0.18 -0.5
29,080 + EX28DRAFT_4363 0.18 -1.7
29,080 + EX28DRAFT_4363 0.18 -0.1
29,080 + EX28DRAFT_4363 0.18 -0.3
29,080 + EX28DRAFT_4363 0.18 +0.6
29,081 - EX28DRAFT_4363 0.18 +0.1
29,081 - EX28DRAFT_4363 0.18 -0.5
29,081 - EX28DRAFT_4363 0.18 +0.6
29,081 - EX28DRAFT_4363 0.18 -0.0
29,081 - EX28DRAFT_4363 0.18 +2.0
29,091 + EX28DRAFT_4363 0.19 -0.2
29,099 + EX28DRAFT_4363 0.19 +0.3
29,099 + EX28DRAFT_4363 0.19 -0.3
29,099 + EX28DRAFT_4363 0.19 +0.7
29,100 - EX28DRAFT_4363 0.19 +1.0
29,100 - EX28DRAFT_4363 0.19 +0.0
29,100 - EX28DRAFT_4363 0.19 +0.1
29,100 - EX28DRAFT_4363 0.19 +0.1
29,100 - EX28DRAFT_4363 0.19 +0.1
29,100 - EX28DRAFT_4363 0.19 -0.1
29,103 + EX28DRAFT_4363 0.19 -0.2
29,154 + EX28DRAFT_4363 0.21 -0.2
29,154 + EX28DRAFT_4363 0.21 +0.2
29,154 + EX28DRAFT_4363 0.21 -0.1
29,155 - EX28DRAFT_4363 0.21 +1.7
29,155 - EX28DRAFT_4363 0.21 -0.6
29,307 - EX28DRAFT_4363 0.26 -1.2
29,457 + EX28DRAFT_4363 0.31 -0.2
29,457 + EX28DRAFT_4363 0.31 -1.6
29,458 - EX28DRAFT_4363 0.31 -2.7
29,466 + EX28DRAFT_4363 0.31 -2.2
29,466 + EX28DRAFT_4363 0.31 -0.6
29,467 - EX28DRAFT_4363 0.31 +0.5
29,477 + EX28DRAFT_4363 0.32 -0.1
29,492 + EX28DRAFT_4363 0.32 +0.3

Or see this region's nucleotide sequence