Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4328

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4327 and EX28DRAFT_4328 are separated by 22 nucleotidesEX28DRAFT_4328 and EX28DRAFT_4329 are separated by 51 nucleotides EX28DRAFT_4327: EX28DRAFT_4327 - transcriptional regulator, IclR family, at 133,925 to 134,755 _4327 EX28DRAFT_4328: EX28DRAFT_4328 - Isocitrate dehydrogenase kinase/phosphatase, at 134,778 to 136,529 _4328 EX28DRAFT_4329: EX28DRAFT_4329 - isocitrate lyase, at 136,581 to 137,885 _4329 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1at 134.365 kb on + strand, within EX28DRAFT_4327at 134.366 kb on - strand, within EX28DRAFT_4327at 134.486 kb on + strand, within EX28DRAFT_4327at 134.487 kb on - strand, within EX28DRAFT_4327at 135.060 kb on + strand, within EX28DRAFT_4328at 135.060 kb on + strand, within EX28DRAFT_4328at 135.060 kb on + strand, within EX28DRAFT_4328at 135.061 kb on - strand, within EX28DRAFT_4328at 135.061 kb on - strand, within EX28DRAFT_4328at 135.089 kb on - strand, within EX28DRAFT_4328at 135.110 kb on - strand, within EX28DRAFT_4328at 135.174 kb on - strand, within EX28DRAFT_4328at 135.208 kb on + strand, within EX28DRAFT_4328at 135.516 kb on - strand, within EX28DRAFT_4328at 135.524 kb on + strand, within EX28DRAFT_4328at 135.524 kb on + strand, within EX28DRAFT_4328at 135.552 kb on - strand, within EX28DRAFT_4328at 135.570 kb on - strand, within EX28DRAFT_4328at 135.570 kb on - strand, within EX28DRAFT_4328at 135.619 kb on + strand, within EX28DRAFT_4328at 135.619 kb on + strand, within EX28DRAFT_4328at 135.620 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.678 kb on - strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.679 kb on + strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.680 kb on - strand, within EX28DRAFT_4328at 135.764 kb on - strand, within EX28DRAFT_4328at 135.917 kb on + strand, within EX28DRAFT_4328at 136.005 kb on - strand, within EX28DRAFT_4328at 136.006 kb on + strand, within EX28DRAFT_4328at 136.007 kb on - strand, within EX28DRAFT_4328at 136.026 kb on - strand, within EX28DRAFT_4328at 136.026 kb on - strand, within EX28DRAFT_4328at 136.167 kb on + strand, within EX28DRAFT_4328at 136.167 kb on + strand, within EX28DRAFT_4328at 136.183 kb on - strand, within EX28DRAFT_4328at 136.210 kb on + strand, within EX28DRAFT_4328at 136.211 kb on - strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.273 kb on + strand, within EX28DRAFT_4328at 136.274 kb on - strand, within EX28DRAFT_4328at 136.274 kb on - strand, within EX28DRAFT_4328at 136.380 kb on - strandat 136.494 kb on - strandat 136.494 kb on - strandat 136.530 kb on - strandat 136.530 kb on - strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.531 kb on + strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.532 kb on - strandat 136.632 kb on - strandat 136.644 kb on - strandat 136.658 kb on + strandat 136.754 kb on - strand, within EX28DRAFT_4329at 136.754 kb on - strand, within EX28DRAFT_4329at 136.846 kb on + strand, within EX28DRAFT_4329at 136.853 kb on - strand, within EX28DRAFT_4329at 136.939 kb on + strand, within EX28DRAFT_4329at 136.939 kb on + strand, within EX28DRAFT_4329at 136.940 kb on - strand, within EX28DRAFT_4329at 137.099 kb on - strand, within EX28DRAFT_4329at 137.162 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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134,365 + EX28DRAFT_4327 0.53 -0.3
134,366 - EX28DRAFT_4327 0.53 -2.9
134,486 + EX28DRAFT_4327 0.68 +0.4
134,487 - EX28DRAFT_4327 0.68 -1.8
135,060 + EX28DRAFT_4328 0.16 -0.1
135,060 + EX28DRAFT_4328 0.16 +1.3
135,060 + EX28DRAFT_4328 0.16 +0.9
135,061 - EX28DRAFT_4328 0.16 -0.3
135,061 - EX28DRAFT_4328 0.16 -1.1
135,089 - EX28DRAFT_4328 0.18 -1.8
135,110 - EX28DRAFT_4328 0.19 -0.7
135,174 - EX28DRAFT_4328 0.23 -0.6
135,208 + EX28DRAFT_4328 0.25 +0.0
135,516 - EX28DRAFT_4328 0.42 +0.4
135,524 + EX28DRAFT_4328 0.43 +0.1
135,524 + EX28DRAFT_4328 0.43 +0.4
135,552 - EX28DRAFT_4328 0.44 +0.9
135,570 - EX28DRAFT_4328 0.45 -1.2
135,570 - EX28DRAFT_4328 0.45 -0.2
135,619 + EX28DRAFT_4328 0.48 +0.6
135,619 + EX28DRAFT_4328 0.48 +0.3
135,620 - EX28DRAFT_4328 0.48 +0.5
135,678 - EX28DRAFT_4328 0.51 +0.3
135,678 - EX28DRAFT_4328 0.51 +0.4
135,678 - EX28DRAFT_4328 0.51 -0.2
135,679 + EX28DRAFT_4328 0.51 +0.5
135,679 + EX28DRAFT_4328 0.51 +0.7
135,679 + EX28DRAFT_4328 0.51 +0.4
135,680 - EX28DRAFT_4328 0.51 +0.3
135,680 - EX28DRAFT_4328 0.51 +0.2
135,680 - EX28DRAFT_4328 0.51 -0.2
135,680 - EX28DRAFT_4328 0.51 +1.0
135,764 - EX28DRAFT_4328 0.56 +0.7
135,917 + EX28DRAFT_4328 0.65 +0.2
136,005 - EX28DRAFT_4328 0.70 +0.5
136,006 + EX28DRAFT_4328 0.70 -0.1
136,007 - EX28DRAFT_4328 0.70 -0.1
136,026 - EX28DRAFT_4328 0.71 -0.3
136,026 - EX28DRAFT_4328 0.71 +0.3
136,167 + EX28DRAFT_4328 0.79 -0.7
136,167 + EX28DRAFT_4328 0.79 -0.4
136,183 - EX28DRAFT_4328 0.80 -0.3
136,210 + EX28DRAFT_4328 0.82 +0.3
136,211 - EX28DRAFT_4328 0.82 +0.7
136,273 + EX28DRAFT_4328 0.85 +0.3
136,273 + EX28DRAFT_4328 0.85 +0.1
136,273 + EX28DRAFT_4328 0.85 -0.9
136,274 - EX28DRAFT_4328 0.85 +0.5
136,274 - EX28DRAFT_4328 0.85 +0.4
136,380 - +0.5
136,494 - -1.1
136,494 - +0.4
136,530 - -0.4
136,530 - -0.1
136,531 + -0.0
136,531 + +0.2
136,531 + +0.6
136,531 + -0.3
136,531 + +0.0
136,532 - +0.2
136,532 - -0.9
136,532 - +0.3
136,532 - +0.3
136,632 - +0.1
136,644 - +0.8
136,658 + -1.6
136,754 - EX28DRAFT_4329 0.13 +0.2
136,754 - EX28DRAFT_4329 0.13 +0.2
136,846 + EX28DRAFT_4329 0.20 +0.6
136,853 - EX28DRAFT_4329 0.21 +0.4
136,939 + EX28DRAFT_4329 0.27 -0.0
136,939 + EX28DRAFT_4329 0.27 -0.8
136,940 - EX28DRAFT_4329 0.28 -0.6
137,099 - EX28DRAFT_4329 0.40 -0.6
137,162 + EX28DRAFT_4329 0.45 -0.1
137,437 + EX28DRAFT_4329 0.66 -0.2
137,437 + EX28DRAFT_4329 0.66 -1.1
137,438 - EX28DRAFT_4329 0.66 -0.6
137,438 - EX28DRAFT_4329 0.66 +0.5

Or see this region's nucleotide sequence