Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4324

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4322 and EX28DRAFT_4323 are separated by 197 nucleotidesEX28DRAFT_4323 and EX28DRAFT_4324 are separated by 6 nucleotidesEX28DRAFT_4324 and EX28DRAFT_4325 overlap by 4 nucleotides EX28DRAFT_4322: EX28DRAFT_4322 - pseudouridine synthase, at 126,637 to 127,509 _4322 EX28DRAFT_4323: EX28DRAFT_4323 - putative addiction module killer protein, at 127,707 to 128,009 _4323 EX28DRAFT_4324: EX28DRAFT_4324 - probable addiction module antidote protein, at 128,016 to 128,303 _4324 EX28DRAFT_4325: EX28DRAFT_4325 - Na/Pi-cotransporter, at 128,300 to 129,931 _4325 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 127.100 kb on + strand, within EX28DRAFT_4322at 127.100 kb on + strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.213 kb on - strand, within EX28DRAFT_4322at 127.354 kb on - strand, within EX28DRAFT_4322at 127.475 kb on + strandat 127.475 kb on + strandat 127.475 kb on + strandat 127.476 kb on - strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.510 kb on - strandat 127.510 kb on - strandat 127.511 kb on - strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.535 kb on + strandat 127.536 kb on - strandat 127.536 kb on - strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.564 kb on + strandat 127.632 kb on + strandat 127.643 kb on + strandat 127.653 kb on + strandat 127.706 kb on + strandat 127.707 kb on - strandat 127.718 kb on - strandat 127.718 kb on - strandat 127.830 kb on - strand, within EX28DRAFT_4323at 127.848 kb on - strand, within EX28DRAFT_4323at 127.849 kb on + strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.967 kb on + strand, within EX28DRAFT_4323at 128.035 kb on - strandat 128.035 kb on - strandat 128.115 kb on + strand, within EX28DRAFT_4324at 128.238 kb on - strand, within EX28DRAFT_4324at 128.304 kb on + strandat 128.304 kb on + strandat 128.305 kb on - strandat 128.305 kb on - strandat 128.349 kb on + strandat 128.396 kb on + strandat 128.426 kb on - strandat 128.672 kb on - strand, within EX28DRAFT_4325at 128.771 kb on - strand, within EX28DRAFT_4325at 128.781 kb on + strand, within EX28DRAFT_4325at 128.781 kb on + strand, within EX28DRAFT_4325at 128.782 kb on - strand, within EX28DRAFT_4325at 128.788 kb on + strand, within EX28DRAFT_4325at 128.789 kb on - strand, within EX28DRAFT_4325at 128.798 kb on - strand, within EX28DRAFT_4325at 128.799 kb on + strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 129.102 kb on + strand, within EX28DRAFT_4325at 129.197 kb on - strand, within EX28DRAFT_4325at 129.250 kb on + strand, within EX28DRAFT_4325at 129.251 kb on - strand, within EX28DRAFT_4325

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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127,100 + EX28DRAFT_4322 0.53 +1.2
127,100 + EX28DRAFT_4322 0.53 -0.9
127,101 - EX28DRAFT_4322 0.53 +0.7
127,101 - EX28DRAFT_4322 0.53 +0.1
127,212 + EX28DRAFT_4322 0.66 -0.2
127,212 + EX28DRAFT_4322 0.66 -0.1
127,213 - EX28DRAFT_4322 0.66 -1.1
127,354 - EX28DRAFT_4322 0.82 +1.6
127,475 + +0.5
127,475 + +0.2
127,475 + -1.1
127,476 - -0.6
127,509 + -0.0
127,509 + -1.1
127,509 + -1.7
127,509 + -0.1
127,509 + +1.8
127,510 - +0.3
127,510 - -0.4
127,511 - -1.6
127,533 + -0.3
127,533 + -0.2
127,534 - +0.1
127,534 - -0.4
127,534 - -1.5
127,535 + -0.1
127,536 - +1.7
127,536 - +0.4
127,540 + -0.2
127,540 + +0.2
127,540 + +0.1
127,564 + +0.1
127,632 + +0.3
127,643 + -0.5
127,653 + -0.3
127,706 + +0.4
127,707 - -0.3
127,718 - +0.9
127,718 - -0.0
127,830 - EX28DRAFT_4323 0.41 +0.4
127,848 - EX28DRAFT_4323 0.47 -0.7
127,849 + EX28DRAFT_4323 0.47 -1.3
127,850 - EX28DRAFT_4323 0.47 +0.4
127,850 - EX28DRAFT_4323 0.47 +0.2
127,850 - EX28DRAFT_4323 0.47 +0.4
127,850 - EX28DRAFT_4323 0.47 -0.2
127,850 - EX28DRAFT_4323 0.47 -0.2
127,850 - EX28DRAFT_4323 0.47 +0.1
127,850 - EX28DRAFT_4323 0.47 -1.1
127,963 + EX28DRAFT_4323 0.84 -0.1
127,963 + EX28DRAFT_4323 0.84 +1.1
127,963 + EX28DRAFT_4323 0.84 +0.1
127,963 + EX28DRAFT_4323 0.84 -0.1
127,963 + EX28DRAFT_4323 0.84 +0.3
127,963 + EX28DRAFT_4323 0.84 -1.1
127,964 - EX28DRAFT_4323 0.85 -0.3
127,964 - EX28DRAFT_4323 0.85 -0.1
127,964 - EX28DRAFT_4323 0.85 +0.8
127,964 - EX28DRAFT_4323 0.85 +1.2
127,964 - EX28DRAFT_4323 0.85 +1.5
127,964 - EX28DRAFT_4323 0.85 +0.2
127,964 - EX28DRAFT_4323 0.85 +0.6
127,964 - EX28DRAFT_4323 0.85 +0.4
127,967 + EX28DRAFT_4323 0.86 -2.5
128,035 - -0.0
128,035 - -0.6
128,115 + EX28DRAFT_4324 0.34 +0.1
128,238 - EX28DRAFT_4324 0.77 +2.0
128,304 + -1.4
128,304 + -0.8
128,305 - +0.7
128,305 - -0.7
128,349 + -0.2
128,396 + -0.6
128,426 - +0.5
128,672 - EX28DRAFT_4325 0.23 +0.5
128,771 - EX28DRAFT_4325 0.29 +0.1
128,781 + EX28DRAFT_4325 0.29 +0.1
128,781 + EX28DRAFT_4325 0.29 -0.4
128,782 - EX28DRAFT_4325 0.30 +0.6
128,788 + EX28DRAFT_4325 0.30 -0.4
128,789 - EX28DRAFT_4325 0.30 +0.5
128,798 - EX28DRAFT_4325 0.31 +0.3
128,799 + EX28DRAFT_4325 0.31 +0.2
128,800 - EX28DRAFT_4325 0.31 +0.1
128,800 - EX28DRAFT_4325 0.31 +0.5
128,800 - EX28DRAFT_4325 0.31 +0.8
129,102 + EX28DRAFT_4325 0.49 +1.6
129,197 - EX28DRAFT_4325 0.55 -0.9
129,250 + EX28DRAFT_4325 0.58 +0.5
129,251 - EX28DRAFT_4325 0.58 +1.1

Or see this region's nucleotide sequence