Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4299 and EX28DRAFT_4300 overlap by 17 nucleotides EX28DRAFT_4300 and EX28DRAFT_4301 are separated by 60 nucleotides EX28DRAFT_4301 and EX28DRAFT_4302 are separated by 129 nucleotides EX28DRAFT_4302 and EX28DRAFT_4303 are separated by 76 nucleotides
EX28DRAFT_4299: EX28DRAFT_4299 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 103,264 to 103,866
_4299
EX28DRAFT_4300: EX28DRAFT_4300 - Predicted membrane protein, at 103,850 to 104,131
_4300
EX28DRAFT_4301: EX28DRAFT_4301 - Protein of unknown function (DUF2500), at 104,192 to 104,548
_4301
EX28DRAFT_4302: EX28DRAFT_4302 - Predicted membrane protein, at 104,678 to 105,304
_4302
EX28DRAFT_4303: EX28DRAFT_4303 - heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase, at 105,381 to 107,552
_4303
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.982 kb on - strand, within EX28DRAFT_4300 at 104.229 kb on + strand, within EX28DRAFT_4301 at 104.229 kb on + strand, within EX28DRAFT_4301 at 104.268 kb on + strand, within EX28DRAFT_4301 at 104.320 kb on + strand, within EX28DRAFT_4301 at 104.583 kb on + strand at 104.626 kb on + strand at 104.627 kb on - strand at 104.674 kb on + strand at 104.674 kb on + strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.692 kb on + strand at 104.693 kb on - strand at 104.720 kb on + strand at 104.721 kb on - strand at 104.768 kb on - strand, within EX28DRAFT_4302 at 104.834 kb on + strand, within EX28DRAFT_4302 at 104.945 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.947 kb on + strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.948 kb on - strand, within EX28DRAFT_4302 at 104.954 kb on + strand, within EX28DRAFT_4302 at 105.076 kb on + strand, within EX28DRAFT_4302 at 105.082 kb on + strand, within EX28DRAFT_4302 at 105.106 kb on - strand, within EX28DRAFT_4302 at 105.260 kb on + strand at 105.296 kb on + strand at 105.296 kb on + strand at 105.296 kb on + strand at 105.297 kb on - strand at 105.297 kb on - strand at 105.297 kb on - strand at 105.297 kb on - strand at 105.297 kb on - strand at 105.298 kb on + strand at 105.302 kb on + strand at 105.302 kb on + strand at 105.302 kb on + strand at 105.302 kb on + strand at 105.302 kb on + strand at 105.303 kb on - strand at 105.306 kb on + strand at 105.361 kb on + strand at 105.398 kb on - strand at 105.398 kb on - strand at 105.428 kb on + strand at 105.428 kb on + strand at 105.696 kb on + strand, within EX28DRAFT_4303 at 105.696 kb on + strand, within EX28DRAFT_4303 at 105.697 kb on - strand, within EX28DRAFT_4303 at 106.043 kb on + strand, within EX28DRAFT_4303 at 106.044 kb on - strand, within EX28DRAFT_4303
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 103,982 - EX28DRAFT_4300 0.47 -2.2 104,229 + EX28DRAFT_4301 0.10 +0.2 104,229 + EX28DRAFT_4301 0.10 +0.4 104,268 + EX28DRAFT_4301 0.21 -1.0 104,320 + EX28DRAFT_4301 0.36 -0.5 104,583 + +2.4 104,626 + -0.1 104,627 - -0.6 104,674 + -0.3 104,674 + -2.1 104,678 - -3.3 104,678 - -0.1 104,692 + -0.4 104,693 - +0.8 104,720 + -0.5 104,721 - -0.4 104,768 - EX28DRAFT_4302 0.14 -0.5 104,834 + EX28DRAFT_4302 0.25 -1.7 104,945 + EX28DRAFT_4302 0.43 +0.1 104,947 + EX28DRAFT_4302 0.43 -0.0 104,947 + EX28DRAFT_4302 0.43 -0.3 104,947 + EX28DRAFT_4302 0.43 -0.2 104,948 - EX28DRAFT_4302 0.43 -0.6 104,948 - EX28DRAFT_4302 0.43 -0.4 104,948 - EX28DRAFT_4302 0.43 +0.6 104,954 + EX28DRAFT_4302 0.44 -0.4 105,076 + EX28DRAFT_4302 0.63 +0.3 105,082 + EX28DRAFT_4302 0.64 -0.7 105,106 - EX28DRAFT_4302 0.68 -0.2 105,260 + -0.2 105,296 + -0.5 105,296 + -1.0 105,296 + -0.1 105,297 - +1.7 105,297 - -0.3 105,297 - -0.0 105,297 - +0.2 105,297 - +0.1 105,298 + +0.2 105,302 + -0.3 105,302 + -0.4 105,302 + +0.3 105,302 + +0.3 105,302 + -0.5 105,303 - -0.1 105,306 + -0.3 105,361 + -0.5 105,398 - +0.0 105,398 - +0.2 105,428 + +0.4 105,428 + -0.2 105,696 + EX28DRAFT_4303 0.15 +1.4 105,696 + EX28DRAFT_4303 0.15 +0.5 105,697 - EX28DRAFT_4303 0.15 +0.3 106,043 + EX28DRAFT_4303 0.30 -0.5 106,044 - EX28DRAFT_4303 0.31 -0.4
Or see this region's nucleotide sequence