Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4258

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4256 and EX28DRAFT_4257 are separated by 81 nucleotidesEX28DRAFT_4257 and EX28DRAFT_4258 are separated by 305 nucleotidesEX28DRAFT_4258 and EX28DRAFT_4259 are separated by 51 nucleotides EX28DRAFT_4256: EX28DRAFT_4256 - hypothetical protein, at 61,284 to 61,574 _4256 EX28DRAFT_4257: EX28DRAFT_4257 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 61,656 to 62,261 _4257 EX28DRAFT_4258: EX28DRAFT_4258 - hypothetical protein, at 62,567 to 63,697 _4258 EX28DRAFT_4259: EX28DRAFT_4259 - alanine racemase, at 63,749 to 64,828 _4259 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1at 61.662 kb on - strandat 61.669 kb on + strandat 61.740 kb on + strand, within EX28DRAFT_4257at 61.740 kb on + strand, within EX28DRAFT_4257at 61.741 kb on - strand, within EX28DRAFT_4257at 61.846 kb on + strand, within EX28DRAFT_4257at 61.933 kb on - strand, within EX28DRAFT_4257at 61.933 kb on - strand, within EX28DRAFT_4257at 61.968 kb on - strand, within EX28DRAFT_4257at 62.007 kb on + strand, within EX28DRAFT_4257at 62.072 kb on + strand, within EX28DRAFT_4257at 62.114 kb on + strand, within EX28DRAFT_4257at 62.130 kb on - strand, within EX28DRAFT_4257at 62.383 kb on + strandat 62.423 kb on + strandat 62.512 kb on - strandat 62.629 kb on + strandat 62.634 kb on - strandat 62.830 kb on + strand, within EX28DRAFT_4258at 62.834 kb on - strand, within EX28DRAFT_4258at 62.882 kb on + strand, within EX28DRAFT_4258at 62.954 kb on + strand, within EX28DRAFT_4258at 62.955 kb on - strand, within EX28DRAFT_4258at 62.955 kb on - strand, within EX28DRAFT_4258at 62.960 kb on + strand, within EX28DRAFT_4258at 62.960 kb on + strand, within EX28DRAFT_4258at 62.961 kb on - strand, within EX28DRAFT_4258at 62.972 kb on - strand, within EX28DRAFT_4258at 63.076 kb on + strand, within EX28DRAFT_4258at 63.077 kb on - strand, within EX28DRAFT_4258at 63.085 kb on + strand, within EX28DRAFT_4258at 63.085 kb on + strand, within EX28DRAFT_4258at 63.086 kb on - strand, within EX28DRAFT_4258at 63.086 kb on - strand, within EX28DRAFT_4258at 63.086 kb on - strand, within EX28DRAFT_4258at 63.120 kb on + strand, within EX28DRAFT_4258at 63.140 kb on - strand, within EX28DRAFT_4258at 63.218 kb on + strand, within EX28DRAFT_4258at 63.218 kb on + strand, within EX28DRAFT_4258at 63.218 kb on + strand, within EX28DRAFT_4258at 63.218 kb on + strand, within EX28DRAFT_4258at 63.218 kb on + strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.219 kb on - strand, within EX28DRAFT_4258at 63.297 kb on + strand, within EX28DRAFT_4258at 63.298 kb on - strand, within EX28DRAFT_4258at 63.298 kb on - strand, within EX28DRAFT_4258at 63.301 kb on + strand, within EX28DRAFT_4258at 63.301 kb on + strand, within EX28DRAFT_4258at 63.301 kb on + strand, within EX28DRAFT_4258at 63.301 kb on + strand, within EX28DRAFT_4258at 63.301 kb on + strand, within EX28DRAFT_4258at 63.302 kb on - strand, within EX28DRAFT_4258at 63.302 kb on - strand, within EX28DRAFT_4258at 63.302 kb on - strand, within EX28DRAFT_4258at 63.302 kb on - strand, within EX28DRAFT_4258at 63.302 kb on - strand, within EX28DRAFT_4258at 63.542 kb on + strand, within EX28DRAFT_4258at 63.542 kb on + strand, within EX28DRAFT_4258at 63.543 kb on - strand, within EX28DRAFT_4258at 63.543 kb on - strand, within EX28DRAFT_4258at 63.543 kb on - strand, within EX28DRAFT_4258at 63.659 kb on + strandat 63.660 kb on - strandat 63.681 kb on - strandat 63.681 kb on - strandat 63.681 kb on - strandat 63.681 kb on - strandat 63.880 kb on + strand, within EX28DRAFT_4259at 64.087 kb on + strand, within EX28DRAFT_4259at 64.192 kb on + strand, within EX28DRAFT_4259at 64.192 kb on + strand, within EX28DRAFT_4259at 64.192 kb on + strand, within EX28DRAFT_4259at 64.192 kb on + strand, within EX28DRAFT_4259at 64.193 kb on - strand, within EX28DRAFT_4259at 64.363 kb on + strand, within EX28DRAFT_4259at 64.407 kb on + strand, within EX28DRAFT_4259at 64.532 kb on + strand, within EX28DRAFT_4259at 64.568 kb on + strand, within EX28DRAFT_4259at 64.604 kb on + strand, within EX28DRAFT_4259

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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61,662 - +0.5
61,669 + -0.6
61,740 + EX28DRAFT_4257 0.14 +0.5
61,740 + EX28DRAFT_4257 0.14 +0.1
61,741 - EX28DRAFT_4257 0.14 +0.0
61,846 + EX28DRAFT_4257 0.31 +0.4
61,933 - EX28DRAFT_4257 0.46 -0.8
61,933 - EX28DRAFT_4257 0.46 +0.1
61,968 - EX28DRAFT_4257 0.51 +0.4
62,007 + EX28DRAFT_4257 0.58 +0.8
62,072 + EX28DRAFT_4257 0.69 +0.2
62,114 + EX28DRAFT_4257 0.76 +0.3
62,130 - EX28DRAFT_4257 0.78 +0.6
62,383 + -0.9
62,423 + -0.1
62,512 - -0.8
62,629 + +1.0
62,634 - -0.4
62,830 + EX28DRAFT_4258 0.23 +0.4
62,834 - EX28DRAFT_4258 0.24 -1.6
62,882 + EX28DRAFT_4258 0.28 -1.1
62,954 + EX28DRAFT_4258 0.34 -0.1
62,955 - EX28DRAFT_4258 0.34 +0.3
62,955 - EX28DRAFT_4258 0.34 -0.3
62,960 + EX28DRAFT_4258 0.35 -0.3
62,960 + EX28DRAFT_4258 0.35 -0.9
62,961 - EX28DRAFT_4258 0.35 -0.0
62,972 - EX28DRAFT_4258 0.36 -0.2
63,076 + EX28DRAFT_4258 0.45 +0.1
63,077 - EX28DRAFT_4258 0.45 -0.1
63,085 + EX28DRAFT_4258 0.46 +0.6
63,085 + EX28DRAFT_4258 0.46 +0.1
63,086 - EX28DRAFT_4258 0.46 +0.2
63,086 - EX28DRAFT_4258 0.46 +0.6
63,086 - EX28DRAFT_4258 0.46 +0.5
63,120 + EX28DRAFT_4258 0.49 -0.4
63,140 - EX28DRAFT_4258 0.51 -1.0
63,218 + EX28DRAFT_4258 0.58 -0.9
63,218 + EX28DRAFT_4258 0.58 +0.4
63,218 + EX28DRAFT_4258 0.58 -0.6
63,218 + EX28DRAFT_4258 0.58 -3.7
63,218 + EX28DRAFT_4258 0.58 -0.2
63,219 - EX28DRAFT_4258 0.58 -1.5
63,219 - EX28DRAFT_4258 0.58 +0.2
63,219 - EX28DRAFT_4258 0.58 +1.5
63,219 - EX28DRAFT_4258 0.58 +1.7
63,219 - EX28DRAFT_4258 0.58 +0.4
63,219 - EX28DRAFT_4258 0.58 -0.1
63,297 + EX28DRAFT_4258 0.65 +0.2
63,298 - EX28DRAFT_4258 0.65 -1.8
63,298 - EX28DRAFT_4258 0.65 -1.5
63,301 + EX28DRAFT_4258 0.65 +0.3
63,301 + EX28DRAFT_4258 0.65 +0.7
63,301 + EX28DRAFT_4258 0.65 -0.6
63,301 + EX28DRAFT_4258 0.65 +0.2
63,301 + EX28DRAFT_4258 0.65 -3.3
63,302 - EX28DRAFT_4258 0.65 -0.7
63,302 - EX28DRAFT_4258 0.65 +0.8
63,302 - EX28DRAFT_4258 0.65 +1.2
63,302 - EX28DRAFT_4258 0.65 +0.1
63,302 - EX28DRAFT_4258 0.65 -0.6
63,542 + EX28DRAFT_4258 0.86 +0.1
63,542 + EX28DRAFT_4258 0.86 +0.3
63,543 - EX28DRAFT_4258 0.86 -0.9
63,543 - EX28DRAFT_4258 0.86 +0.4
63,543 - EX28DRAFT_4258 0.86 -0.1
63,659 + +0.2
63,660 - +0.2
63,681 - +0.4
63,681 - +1.0
63,681 - +0.6
63,681 - -0.6
63,880 + EX28DRAFT_4259 0.12 +0.3
64,087 + EX28DRAFT_4259 0.31 -0.1
64,192 + EX28DRAFT_4259 0.41 +0.5
64,192 + EX28DRAFT_4259 0.41 -0.3
64,192 + EX28DRAFT_4259 0.41 +0.9
64,192 + EX28DRAFT_4259 0.41 -0.3
64,193 - EX28DRAFT_4259 0.41 -0.7
64,363 + EX28DRAFT_4259 0.57 +0.0
64,407 + EX28DRAFT_4259 0.61 -0.2
64,532 + EX28DRAFT_4259 0.72 +0.3
64,568 + EX28DRAFT_4259 0.76 +0.1
64,604 + EX28DRAFT_4259 0.79 +1.1

Or see this region's nucleotide sequence