Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4086

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4084 and EX28DRAFT_4085 overlap by 4 nucleotidesEX28DRAFT_4085 and EX28DRAFT_4086 overlap by 4 nucleotidesEX28DRAFT_4086 and EX28DRAFT_4087 overlap by 1 nucleotidesEX28DRAFT_4087 and EX28DRAFT_4088 overlap by 4 nucleotidesEX28DRAFT_4088 and EX28DRAFT_4089 overlap by 53 nucleotides EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535 _4084 EX28DRAFT_4085: EX28DRAFT_4085 - Predicted xylanase/chitin deacetylase, at 60,532 to 61,434 _4085 EX28DRAFT_4086: EX28DRAFT_4086 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 61,431 to 63,086 _4086 EX28DRAFT_4087: EX28DRAFT_4087 - Membrane transporters of cations and cationic drugs, at 63,086 to 63,421 _4087 EX28DRAFT_4088: EX28DRAFT_4088 - hypothetical protein, at 63,418 to 63,807 _4088 EX28DRAFT_4089: EX28DRAFT_4089 - Phosphopantetheinyl transferase, at 63,755 to 64,372 _4089 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 60.678 kb on - strand, within EX28DRAFT_4085at 60.678 kb on - strand, within EX28DRAFT_4085at 60.678 kb on - strand, within EX28DRAFT_4085at 61.099 kb on - strand, within EX28DRAFT_4085at 61.178 kb on - strand, within EX28DRAFT_4085at 61.219 kb on + strand, within EX28DRAFT_4085at 61.219 kb on + strand, within EX28DRAFT_4085at 61.220 kb on - strand, within EX28DRAFT_4085at 61.220 kb on - strand, within EX28DRAFT_4085at 61.221 kb on + strand, within EX28DRAFT_4085at 61.221 kb on + strand, within EX28DRAFT_4085at 61.222 kb on - strand, within EX28DRAFT_4085at 61.222 kb on - strand, within EX28DRAFT_4085at 61.482 kb on + strandat 61.603 kb on - strand, within EX28DRAFT_4086at 61.691 kb on + strand, within EX28DRAFT_4086at 61.691 kb on + strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.693 kb on + strand, within EX28DRAFT_4086at 61.754 kb on + strand, within EX28DRAFT_4086at 61.767 kb on - strand, within EX28DRAFT_4086at 61.767 kb on - strand, within EX28DRAFT_4086at 61.781 kb on + strand, within EX28DRAFT_4086at 61.781 kb on + strand, within EX28DRAFT_4086at 61.821 kb on + strand, within EX28DRAFT_4086at 61.821 kb on + strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.839 kb on - strand, within EX28DRAFT_4086at 62.136 kb on + strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.189 kb on + strand, within EX28DRAFT_4086at 62.208 kb on + strand, within EX28DRAFT_4086at 62.209 kb on - strand, within EX28DRAFT_4086at 62.209 kb on - strand, within EX28DRAFT_4086at 62.212 kb on + strand, within EX28DRAFT_4086at 62.213 kb on - strand, within EX28DRAFT_4086at 62.213 kb on - strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.311 kb on - strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.571 kb on + strand, within EX28DRAFT_4086at 62.571 kb on + strand, within EX28DRAFT_4086at 62.571 kb on + strand, within EX28DRAFT_4086at 62.572 kb on - strand, within EX28DRAFT_4086at 62.572 kb on - strand, within EX28DRAFT_4086at 62.573 kb on + strand, within EX28DRAFT_4086at 62.573 kb on + strand, within EX28DRAFT_4086at 62.574 kb on - strand, within EX28DRAFT_4086at 62.603 kb on + strand, within EX28DRAFT_4086at 62.603 kb on + strand, within EX28DRAFT_4086at 62.603 kb on + strand, within EX28DRAFT_4086at 62.604 kb on - strand, within EX28DRAFT_4086at 62.627 kb on + strand, within EX28DRAFT_4086at 62.628 kb on - strand, within EX28DRAFT_4086at 62.913 kb on + strand, within EX28DRAFT_4086at 63.005 kb on + strandat 63.042 kb on + strandat 63.043 kb on - strandat 63.043 kb on - strandat 63.043 kb on - strandat 63.044 kb on + strandat 63.805 kb on + strandat 63.826 kb on + strand, within EX28DRAFT_4089at 63.826 kb on + strand, within EX28DRAFT_4089at 63.827 kb on - strand, within EX28DRAFT_4089at 63.827 kb on - strand, within EX28DRAFT_4089at 63.872 kb on + strand, within EX28DRAFT_4089

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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60,678 - EX28DRAFT_4085 0.16 +1.5
60,678 - EX28DRAFT_4085 0.16 +1.5
60,678 - EX28DRAFT_4085 0.16 +0.7
61,099 - EX28DRAFT_4085 0.63 +1.8
61,178 - EX28DRAFT_4085 0.72 +0.8
61,219 + EX28DRAFT_4085 0.76 +0.9
61,219 + EX28DRAFT_4085 0.76 +2.2
61,220 - EX28DRAFT_4085 0.76 +0.9
61,220 - EX28DRAFT_4085 0.76 +2.2
61,221 + EX28DRAFT_4085 0.76 -0.0
61,221 + EX28DRAFT_4085 0.76 +1.2
61,222 - EX28DRAFT_4085 0.76 +1.7
61,222 - EX28DRAFT_4085 0.76 +2.0
61,482 + -0.2
61,603 - EX28DRAFT_4086 0.10 -2.2
61,691 + EX28DRAFT_4086 0.16 +0.5
61,691 + EX28DRAFT_4086 0.16 +0.2
61,692 - EX28DRAFT_4086 0.16 +6.2
61,692 - EX28DRAFT_4086 0.16 +1.2
61,692 - EX28DRAFT_4086 0.16 +1.1
61,692 - EX28DRAFT_4086 0.16 -0.5
61,693 + EX28DRAFT_4086 0.16 -1.7
61,754 + EX28DRAFT_4086 0.20 +0.3
61,767 - EX28DRAFT_4086 0.20 +1.0
61,767 - EX28DRAFT_4086 0.20 +0.8
61,781 + EX28DRAFT_4086 0.21 +0.3
61,781 + EX28DRAFT_4086 0.21 +0.6
61,821 + EX28DRAFT_4086 0.24 -1.1
61,821 + EX28DRAFT_4086 0.24 +0.1
61,822 - EX28DRAFT_4086 0.24 +0.8
61,822 - EX28DRAFT_4086 0.24 -0.2
61,822 - EX28DRAFT_4086 0.24 +1.0
61,839 - EX28DRAFT_4086 0.25 -0.3
62,136 + EX28DRAFT_4086 0.43 +0.5
62,157 - EX28DRAFT_4086 0.44 +1.1
62,157 - EX28DRAFT_4086 0.44 +1.1
62,157 - EX28DRAFT_4086 0.44 +0.7
62,189 + EX28DRAFT_4086 0.46 +0.0
62,208 + EX28DRAFT_4086 0.47 +0.1
62,209 - EX28DRAFT_4086 0.47 +1.0
62,209 - EX28DRAFT_4086 0.47 +0.3
62,212 + EX28DRAFT_4086 0.47 +0.4
62,213 - EX28DRAFT_4086 0.47 -0.9
62,213 - EX28DRAFT_4086 0.47 +0.8
62,310 + EX28DRAFT_4086 0.53 +1.9
62,310 + EX28DRAFT_4086 0.53 +0.7
62,310 + EX28DRAFT_4086 0.53 +0.3
62,310 + EX28DRAFT_4086 0.53 +0.0
62,311 - EX28DRAFT_4086 0.53 +1.0
62,376 + EX28DRAFT_4086 0.57 +1.4
62,376 + EX28DRAFT_4086 0.57 +0.4
62,376 + EX28DRAFT_4086 0.57 +0.8
62,376 + EX28DRAFT_4086 0.57 +0.6
62,377 - EX28DRAFT_4086 0.57 +0.8
62,377 - EX28DRAFT_4086 0.57 +1.3
62,377 - EX28DRAFT_4086 0.57 -0.7
62,377 - EX28DRAFT_4086 0.57 +1.4
62,377 - EX28DRAFT_4086 0.57 -0.2
62,571 + EX28DRAFT_4086 0.69 +0.8
62,571 + EX28DRAFT_4086 0.69 +2.2
62,571 + EX28DRAFT_4086 0.69 +0.3
62,572 - EX28DRAFT_4086 0.69 +1.7
62,572 - EX28DRAFT_4086 0.69 +0.3
62,573 + EX28DRAFT_4086 0.69 +2.9
62,573 + EX28DRAFT_4086 0.69 -0.2
62,574 - EX28DRAFT_4086 0.69 +0.2
62,603 + EX28DRAFT_4086 0.71 -0.2
62,603 + EX28DRAFT_4086 0.71 +0.8
62,603 + EX28DRAFT_4086 0.71 -0.3
62,604 - EX28DRAFT_4086 0.71 +0.8
62,627 + EX28DRAFT_4086 0.72 +0.5
62,628 - EX28DRAFT_4086 0.72 +1.1
62,913 + EX28DRAFT_4086 0.89 +0.5
63,005 + +3.5
63,042 + +0.8
63,043 - -0.3
63,043 - +0.4
63,043 - +0.4
63,044 + +0.1
63,805 + +0.0
63,826 + EX28DRAFT_4089 0.11 +0.4
63,826 + EX28DRAFT_4089 0.11 +0.2
63,827 - EX28DRAFT_4089 0.12 +0.3
63,827 - EX28DRAFT_4089 0.12 -0.0
63,872 + EX28DRAFT_4089 0.19 +0.4

Or see this region's nucleotide sequence