Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4071 and EX28DRAFT_4072 overlap by 1 nucleotides EX28DRAFT_4072 and EX28DRAFT_4073 are separated by 169 nucleotides EX28DRAFT_4073 and EX28DRAFT_4074 are separated by 37 nucleotides
EX28DRAFT_4071: EX28DRAFT_4071 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 46,351 to 47,289
_4071
EX28DRAFT_4072: EX28DRAFT_4072 - Demethylmenaquinone methyltransferase, at 47,289 to 47,981
_4072
EX28DRAFT_4073: EX28DRAFT_4073 - transcriptional regulator, IclR family, at 48,151 to 48,888
_4073
EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260
_4074
Position (kb) 48
49 Strain fitness (log2 ratio) -1
0
1
2 at 47.161 kb on - strand, within EX28DRAFT_4071 at 47.209 kb on + strand at 47.224 kb on + strand at 47.225 kb on - strand at 47.273 kb on - strand at 47.315 kb on + strand at 47.315 kb on + strand at 47.316 kb on - strand at 47.316 kb on - strand at 47.316 kb on - strand at 47.316 kb on - strand at 47.316 kb on - strand at 47.544 kb on + strand, within EX28DRAFT_4072 at 47.590 kb on + strand, within EX28DRAFT_4072 at 47.623 kb on - strand, within EX28DRAFT_4072 at 47.636 kb on + strand, within EX28DRAFT_4072 at 47.636 kb on + strand, within EX28DRAFT_4072 at 47.637 kb on - strand, within EX28DRAFT_4072 at 47.639 kb on + strand, within EX28DRAFT_4072 at 47.639 kb on + strand, within EX28DRAFT_4072 at 47.639 kb on + strand, within EX28DRAFT_4072 at 47.903 kb on - strand, within EX28DRAFT_4072 at 47.981 kb on + strand at 47.981 kb on + strand at 47.982 kb on - strand at 47.982 kb on - strand at 48.059 kb on + strand at 48.088 kb on + strand at 48.088 kb on + strand at 48.089 kb on - strand at 48.118 kb on + strand at 48.147 kb on - strand at 48.170 kb on + strand at 48.310 kb on + strand, within EX28DRAFT_4073 at 48.362 kb on - strand, within EX28DRAFT_4073 at 48.376 kb on + strand, within EX28DRAFT_4073 at 48.376 kb on + strand, within EX28DRAFT_4073 at 48.460 kb on + strand, within EX28DRAFT_4073 at 48.460 kb on + strand, within EX28DRAFT_4073 at 48.461 kb on - strand, within EX28DRAFT_4073 at 48.461 kb on - strand, within EX28DRAFT_4073 at 48.578 kb on + strand, within EX28DRAFT_4073 at 48.579 kb on - strand, within EX28DRAFT_4073 at 48.579 kb on - strand, within EX28DRAFT_4073 at 48.638 kb on - strand, within EX28DRAFT_4073 at 48.773 kb on + strand, within EX28DRAFT_4073 at 48.774 kb on - strand, within EX28DRAFT_4073 at 48.829 kb on - strand at 49.042 kb on - strand at 49.064 kb on - strand, within EX28DRAFT_4074 at 49.148 kb on - strand, within EX28DRAFT_4074 at 49.205 kb on + strand, within EX28DRAFT_4074 at 49.213 kb on + strand, within EX28DRAFT_4074 at 49.213 kb on + strand, within EX28DRAFT_4074 at 49.346 kb on + strand, within EX28DRAFT_4074 at 49.346 kb on + strand, within EX28DRAFT_4074 at 49.646 kb on - strand, within EX28DRAFT_4074 at 49.660 kb on + strand, within EX28DRAFT_4074 at 49.660 kb on + strand, within EX28DRAFT_4074 at 49.665 kb on - strand, within EX28DRAFT_4074 at 49.742 kb on + strand, within EX28DRAFT_4074 at 49.743 kb on - strand, within EX28DRAFT_4074 at 49.849 kb on - strand, within EX28DRAFT_4074
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 47,161 - EX28DRAFT_4071 0.86 +0.5 47,209 + -0.0 47,224 + -0.9 47,225 - -0.4 47,273 - -0.5 47,315 + -0.1 47,315 + -0.7 47,316 - +1.1 47,316 - +1.1 47,316 - +0.5 47,316 - +1.6 47,316 - +1.4 47,544 + EX28DRAFT_4072 0.37 +0.1 47,590 + EX28DRAFT_4072 0.43 +0.9 47,623 - EX28DRAFT_4072 0.48 +1.1 47,636 + EX28DRAFT_4072 0.50 +0.4 47,636 + EX28DRAFT_4072 0.50 -0.5 47,637 - EX28DRAFT_4072 0.50 +1.0 47,639 + EX28DRAFT_4072 0.51 -0.7 47,639 + EX28DRAFT_4072 0.51 +0.4 47,639 + EX28DRAFT_4072 0.51 -0.2 47,903 - EX28DRAFT_4072 0.89 +0.5 47,981 + +0.5 47,981 + -0.4 47,982 - +0.6 47,982 - -0.3 48,059 + -1.0 48,088 + +0.4 48,088 + -0.2 48,089 - +1.7 48,118 + -0.7 48,147 - +1.3 48,170 + -0.9 48,310 + EX28DRAFT_4073 0.22 -0.1 48,362 - EX28DRAFT_4073 0.29 -0.5 48,376 + EX28DRAFT_4073 0.30 +1.6 48,376 + EX28DRAFT_4073 0.30 +0.5 48,460 + EX28DRAFT_4073 0.42 +0.7 48,460 + EX28DRAFT_4073 0.42 -0.5 48,461 - EX28DRAFT_4073 0.42 +1.0 48,461 - EX28DRAFT_4073 0.42 +0.6 48,578 + EX28DRAFT_4073 0.58 -0.5 48,579 - EX28DRAFT_4073 0.58 +0.1 48,579 - EX28DRAFT_4073 0.58 +1.3 48,638 - EX28DRAFT_4073 0.66 +0.5 48,773 + EX28DRAFT_4073 0.84 -0.5 48,774 - EX28DRAFT_4073 0.84 +1.4 48,829 - +1.0 49,042 - +1.1 49,064 - EX28DRAFT_4074 0.10 +2.4 49,148 - EX28DRAFT_4074 0.17 -0.2 49,205 + EX28DRAFT_4074 0.21 -0.5 49,213 + EX28DRAFT_4074 0.21 +0.3 49,213 + EX28DRAFT_4074 0.21 +0.5 49,346 + EX28DRAFT_4074 0.31 +0.3 49,346 + EX28DRAFT_4074 0.31 -0.5 49,646 - EX28DRAFT_4074 0.54 +0.3 49,660 + EX28DRAFT_4074 0.55 -0.1 49,660 + EX28DRAFT_4074 0.55 +0.2 49,665 - EX28DRAFT_4074 0.55 +0.5 49,742 + EX28DRAFT_4074 0.61 -0.2 49,743 - EX28DRAFT_4074 0.61 +0.2 49,849 - EX28DRAFT_4074 0.69 +0.1
Or see this region's nucleotide sequence