Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4063 and EX28DRAFT_4064 overlap by 35 nucleotides EX28DRAFT_4064 and EX28DRAFT_4065 are separated by 96 nucleotides EX28DRAFT_4065 and EX28DRAFT_4066 are separated by 283 nucleotides
EX28DRAFT_4063: EX28DRAFT_4063 - Zn-dependent oligopeptidases, at 38,445 to 40,487
_4063
EX28DRAFT_4064: EX28DRAFT_4064 - Putative SAM-dependent methyltransferase, at 40,453 to 41,247
_4064
EX28DRAFT_4065: EX28DRAFT_4065 - Universal stress protein UspA and related nucleotide-binding proteins, at 41,344 to 41,781
_4065
EX28DRAFT_4066: EX28DRAFT_4066 - Universal stress protein B (UspB), at 42,065 to 42,400
_4066
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 39.454 kb on - strand, within EX28DRAFT_4063 at 39.511 kb on - strand, within EX28DRAFT_4063 at 39.564 kb on + strand, within EX28DRAFT_4063 at 39.564 kb on + strand, within EX28DRAFT_4063 at 39.565 kb on - strand, within EX28DRAFT_4063 at 39.678 kb on + strand, within EX28DRAFT_4063 at 39.738 kb on - strand, within EX28DRAFT_4063 at 39.783 kb on - strand, within EX28DRAFT_4063 at 39.840 kb on - strand, within EX28DRAFT_4063 at 39.875 kb on + strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 40.008 kb on + strand, within EX28DRAFT_4063 at 40.185 kb on - strand, within EX28DRAFT_4063 at 40.279 kb on - strand, within EX28DRAFT_4063 at 40.285 kb on - strand at 40.493 kb on - strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.509 kb on - strand at 40.512 kb on - strand at 40.756 kb on + strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.022 kb on + strand, within EX28DRAFT_4064 at 41.158 kb on + strand, within EX28DRAFT_4064 at 41.294 kb on + strand at 41.294 kb on + strand at 41.295 kb on - strand at 41.337 kb on - strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.346 kb on - strand at 41.478 kb on - strand, within EX28DRAFT_4065 at 41.655 kb on - strand, within EX28DRAFT_4065 at 41.719 kb on - strand, within EX28DRAFT_4065 at 41.782 kb on - strand at 41.782 kb on - strand at 41.798 kb on + strand at 41.798 kb on + strand at 41.799 kb on - strand at 41.799 kb on - strand at 41.814 kb on - strand at 41.856 kb on + strand at 41.857 kb on - strand at 41.862 kb on + strand at 41.863 kb on - strand at 41.950 kb on - strand at 41.953 kb on - strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.065 kb on - strand at 42.065 kb on - strand at 42.112 kb on - strand, within EX28DRAFT_4066 at 42.128 kb on + strand, within EX28DRAFT_4066 at 42.130 kb on + strand, within EX28DRAFT_4066 at 42.160 kb on - strand, within EX28DRAFT_4066 at 42.191 kb on + strand, within EX28DRAFT_4066
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 39,454 - EX28DRAFT_4063 0.49 -1.2 39,511 - EX28DRAFT_4063 0.52 -0.8 39,564 + EX28DRAFT_4063 0.55 +0.7 39,564 + EX28DRAFT_4063 0.55 -0.6 39,565 - EX28DRAFT_4063 0.55 -0.3 39,678 + EX28DRAFT_4063 0.60 -0.2 39,738 - EX28DRAFT_4063 0.63 -2.0 39,783 - EX28DRAFT_4063 0.65 -1.2 39,840 - EX28DRAFT_4063 0.68 -1.5 39,875 + EX28DRAFT_4063 0.70 +0.1 39,876 - EX28DRAFT_4063 0.70 -4.1 39,876 - EX28DRAFT_4063 0.70 -0.1 39,876 - EX28DRAFT_4063 0.70 -3.1 40,008 + EX28DRAFT_4063 0.77 -4.0 40,185 - EX28DRAFT_4063 0.85 -2.0 40,279 - EX28DRAFT_4063 0.90 -1.1 40,285 - -1.4 40,493 - -0.8 40,508 + -1.3 40,508 + +1.5 40,508 + -0.4 40,509 - -1.3 40,512 - -1.0 40,756 + EX28DRAFT_4064 0.38 -0.8 41,000 - EX28DRAFT_4064 0.69 +1.2 41,000 - EX28DRAFT_4064 0.69 -1.2 41,011 - EX28DRAFT_4064 0.70 -1.5 41,011 - EX28DRAFT_4064 0.70 -3.2 41,022 + EX28DRAFT_4064 0.72 -1.3 41,158 + EX28DRAFT_4064 0.89 -0.9 41,294 + +0.7 41,294 + +0.6 41,295 - -0.3 41,337 - -0.9 41,345 + +0.1 41,345 + -0.9 41,345 + +0.9 41,346 - -1.0 41,478 - EX28DRAFT_4065 0.31 +0.1 41,655 - EX28DRAFT_4065 0.71 -0.7 41,719 - EX28DRAFT_4065 0.86 -1.5 41,782 - -1.0 41,782 - -1.5 41,798 + +0.1 41,798 + -1.6 41,799 - -2.4 41,799 - -1.2 41,814 - +0.9 41,856 + +0.1 41,857 - -3.3 41,862 + -0.2 41,863 - -0.2 41,950 - -2.0 41,953 - -4.3 42,064 + -0.1 42,064 + -0.2 42,064 + +0.3 42,064 + -0.2 42,064 + -1.0 42,065 - -0.9 42,065 - -1.2 42,112 - EX28DRAFT_4066 0.14 -1.1 42,128 + EX28DRAFT_4066 0.19 -0.8 42,130 + EX28DRAFT_4066 0.19 -1.2 42,160 - EX28DRAFT_4066 0.28 -0.3 42,191 + EX28DRAFT_4066 0.38 -0.0
Or see this region's nucleotide sequence