Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotides EX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides EX28DRAFT_4027 and EX28DRAFT_4028 are separated by 106 nucleotides
EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984
_4025
EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954
_4026
EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872
_4027
EX28DRAFT_4028: EX28DRAFT_4028 - ribokinase, at 239,979 to 240,908
_4028
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.982 kb on + strand at 237.983 kb on - strand at 237.983 kb on - strand at 237.994 kb on + strand at 238.020 kb on - strand at 238.020 kb on - strand at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.121 kb on - strand, within EX28DRAFT_4026 at 238.528 kb on + strand, within EX28DRAFT_4026 at 238.529 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.551 kb on - strand, within EX28DRAFT_4026 at 238.580 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.582 kb on + strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.583 kb on - strand, within EX28DRAFT_4026 at 238.586 kb on + strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.587 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.640 kb on - strand, within EX28DRAFT_4026 at 238.652 kb on - strand, within EX28DRAFT_4026 at 238.658 kb on + strand, within EX28DRAFT_4026 at 238.659 kb on - strand, within EX28DRAFT_4026 at 238.745 kb on + strand, within EX28DRAFT_4026 at 238.873 kb on - strand at 238.886 kb on + strand at 238.935 kb on + strand at 238.965 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.977 kb on + strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand at 238.978 kb on - strand at 239.037 kb on + strand at 239.038 kb on - strand at 239.150 kb on + strand, within EX28DRAFT_4027 at 239.214 kb on + strand, within EX28DRAFT_4027 at 239.268 kb on + strand, within EX28DRAFT_4027 at 239.269 kb on - strand, within EX28DRAFT_4027 at 239.272 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.399 kb on + strand, within EX28DRAFT_4027 at 239.554 kb on + strand, within EX28DRAFT_4027 at 239.557 kb on + strand, within EX28DRAFT_4027 at 239.557 kb on + strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.558 kb on - strand, within EX28DRAFT_4027 at 239.671 kb on + strand, within EX28DRAFT_4027 at 239.870 kb on + strand at 239.871 kb on - strand at 239.871 kb on - strand at 239.914 kb on + strand at 239.931 kb on + strand at 240.085 kb on - strand, within EX28DRAFT_4028 at 240.197 kb on - strand, within EX28DRAFT_4028 at 240.221 kb on + strand, within EX28DRAFT_4028 at 240.221 kb on + strand, within EX28DRAFT_4028 at 240.458 kb on + strand, within EX28DRAFT_4028 at 240.474 kb on - strand, within EX28DRAFT_4028 at 240.494 kb on - strand, within EX28DRAFT_4028 at 240.494 kb on - strand, within EX28DRAFT_4028 at 240.620 kb on + strand, within EX28DRAFT_4028 at 240.726 kb on - strand, within EX28DRAFT_4028 at 240.744 kb on - strand, within EX28DRAFT_4028 at 240.800 kb on + strand, within EX28DRAFT_4028
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 237,982 + -0.5 237,983 - +0.1 237,983 - -0.4 237,994 + -0.5 238,020 - -0.5 238,020 - +0.2 238,121 - EX28DRAFT_4026 0.14 +0.9 238,121 - EX28DRAFT_4026 0.14 +0.5 238,528 + EX28DRAFT_4026 0.56 +0.2 238,529 - EX28DRAFT_4026 0.56 +0.3 238,551 - EX28DRAFT_4026 0.58 +0.2 238,551 - EX28DRAFT_4026 0.58 -0.1 238,551 - EX28DRAFT_4026 0.58 +1.1 238,551 - EX28DRAFT_4026 0.58 +0.4 238,580 + EX28DRAFT_4026 0.61 -0.4 238,582 + EX28DRAFT_4026 0.61 -0.3 238,582 + EX28DRAFT_4026 0.61 +0.3 238,582 + EX28DRAFT_4026 0.61 +0.0 238,582 + EX28DRAFT_4026 0.61 -0.7 238,583 - EX28DRAFT_4026 0.61 +0.9 238,583 - EX28DRAFT_4026 0.61 +0.8 238,583 - EX28DRAFT_4026 0.61 -0.1 238,583 - EX28DRAFT_4026 0.61 -0.4 238,583 - EX28DRAFT_4026 0.61 +0.5 238,586 + EX28DRAFT_4026 0.62 +0.8 238,587 - EX28DRAFT_4026 0.62 +0.5 238,587 - EX28DRAFT_4026 0.62 +1.0 238,587 - EX28DRAFT_4026 0.62 -0.1 238,640 - EX28DRAFT_4026 0.67 -1.1 238,640 - EX28DRAFT_4026 0.67 +0.3 238,640 - EX28DRAFT_4026 0.67 +0.2 238,652 - EX28DRAFT_4026 0.69 -0.2 238,658 + EX28DRAFT_4026 0.69 +0.7 238,659 - EX28DRAFT_4026 0.69 -0.8 238,745 + EX28DRAFT_4026 0.78 -0.8 238,873 - +0.4 238,886 + -0.9 238,935 + +0.0 238,965 + -0.3 238,977 + -0.5 238,977 + +0.3 238,977 + -0.4 238,977 + -0.3 238,977 + -0.2 238,977 + -0.3 238,977 + -0.3 238,978 - +0.2 238,978 - -0.2 238,978 - +0.4 238,978 - +0.0 239,037 + -0.9 239,038 - +0.2 239,150 + EX28DRAFT_4027 0.19 -0.4 239,214 + EX28DRAFT_4027 0.26 +0.2 239,268 + EX28DRAFT_4027 0.32 -0.1 239,269 - EX28DRAFT_4027 0.32 -0.2 239,272 + EX28DRAFT_4027 0.33 -0.8 239,399 + EX28DRAFT_4027 0.47 -0.4 239,399 + EX28DRAFT_4027 0.47 -0.1 239,399 + EX28DRAFT_4027 0.47 -2.2 239,554 + EX28DRAFT_4027 0.64 -0.5 239,557 + EX28DRAFT_4027 0.65 +0.4 239,557 + EX28DRAFT_4027 0.65 -0.9 239,558 - EX28DRAFT_4027 0.65 +0.1 239,558 - EX28DRAFT_4027 0.65 +0.4 239,558 - EX28DRAFT_4027 0.65 -0.3 239,558 - EX28DRAFT_4027 0.65 +0.2 239,671 + EX28DRAFT_4027 0.77 -0.7 239,870 + -0.1 239,871 - -1.1 239,871 - -0.1 239,914 + -0.3 239,931 + -0.4 240,085 - EX28DRAFT_4028 0.11 +0.2 240,197 - EX28DRAFT_4028 0.23 +0.2 240,221 + EX28DRAFT_4028 0.26 -0.3 240,221 + EX28DRAFT_4028 0.26 +0.0 240,458 + EX28DRAFT_4028 0.52 +2.0 240,474 - EX28DRAFT_4028 0.53 +0.5 240,494 - EX28DRAFT_4028 0.55 -0.3 240,494 - EX28DRAFT_4028 0.55 -0.6 240,620 + EX28DRAFT_4028 0.69 +0.0 240,726 - EX28DRAFT_4028 0.80 -0.7 240,744 - EX28DRAFT_4028 0.82 -1.2 240,800 + EX28DRAFT_4028 0.88 -0.6
Or see this region's nucleotide sequence