Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3980

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3979 and EX28DRAFT_3980 overlap by 4 nucleotidesEX28DRAFT_3980 and EX28DRAFT_3981 overlap by 17 nucleotidesEX28DRAFT_3981 and EX28DRAFT_3982 overlap by 4 nucleotides EX28DRAFT_3979: EX28DRAFT_3979 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 186,718 to 187,866 _3979 EX28DRAFT_3980: EX28DRAFT_3980 - 2-keto-3-deoxy-6-phosphogluconate aldolase, at 187,863 to 188,480 _3980 EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342 _3981 EX28DRAFT_3982: EX28DRAFT_3982 - Transcriptional regulators, at 189,339 to 190,028 _3982 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1at 186.915 kb on + strand, within EX28DRAFT_3979at 186.915 kb on + strand, within EX28DRAFT_3979at 186.915 kb on + strand, within EX28DRAFT_3979at 186.916 kb on - strand, within EX28DRAFT_3979at 186.916 kb on - strand, within EX28DRAFT_3979at 187.034 kb on + strand, within EX28DRAFT_3979at 187.137 kb on + strand, within EX28DRAFT_3979at 187.209 kb on - strand, within EX28DRAFT_3979at 187.515 kb on + strand, within EX28DRAFT_3979at 187.515 kb on + strand, within EX28DRAFT_3979at 187.516 kb on - strand, within EX28DRAFT_3979at 187.517 kb on + strand, within EX28DRAFT_3979at 187.518 kb on - strand, within EX28DRAFT_3979at 187.665 kb on - strand, within EX28DRAFT_3979at 187.744 kb on + strand, within EX28DRAFT_3979at 187.745 kb on - strand, within EX28DRAFT_3979at 187.841 kb on + strandat 187.858 kb on + strandat 187.858 kb on + strandat 188.071 kb on + strand, within EX28DRAFT_3980at 188.072 kb on - strand, within EX28DRAFT_3980at 188.940 kb on - strand, within EX28DRAFT_3981at 188.940 kb on - strand, within EX28DRAFT_3981at 188.940 kb on - strand, within EX28DRAFT_3981at 189.040 kb on - strand, within EX28DRAFT_3981at 189.049 kb on - strand, within EX28DRAFT_3981at 189.222 kb on + strand, within EX28DRAFT_3981at 189.223 kb on - strand, within EX28DRAFT_3981at 189.383 kb on + strandat 189.383 kb on + strandat 189.383 kb on + strandat 189.383 kb on + strandat 189.384 kb on - strandat 189.443 kb on + strand, within EX28DRAFT_3982at 189.443 kb on + strand, within EX28DRAFT_3982

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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186,915 + EX28DRAFT_3979 0.17 -0.1
186,915 + EX28DRAFT_3979 0.17 -0.8
186,915 + EX28DRAFT_3979 0.17 -0.1
186,916 - EX28DRAFT_3979 0.17 -3.7
186,916 - EX28DRAFT_3979 0.17 -0.3
187,034 + EX28DRAFT_3979 0.28 +1.1
187,137 + EX28DRAFT_3979 0.36 -0.2
187,209 - EX28DRAFT_3979 0.43 -0.4
187,515 + EX28DRAFT_3979 0.69 -0.1
187,515 + EX28DRAFT_3979 0.69 +1.0
187,516 - EX28DRAFT_3979 0.69 -0.1
187,517 + EX28DRAFT_3979 0.70 +0.1
187,518 - EX28DRAFT_3979 0.70 -0.1
187,665 - EX28DRAFT_3979 0.82 -0.7
187,744 + EX28DRAFT_3979 0.89 +0.0
187,745 - EX28DRAFT_3979 0.89 +0.5
187,841 + +0.4
187,858 + +0.6
187,858 + -0.9
188,071 + EX28DRAFT_3980 0.34 +0.9
188,072 - EX28DRAFT_3980 0.34 +0.2
188,940 - EX28DRAFT_3981 0.54 -0.0
188,940 - EX28DRAFT_3981 0.54 +0.7
188,940 - EX28DRAFT_3981 0.54 -0.6
189,040 - EX28DRAFT_3981 0.66 +0.4
189,049 - EX28DRAFT_3981 0.67 +0.5
189,222 + EX28DRAFT_3981 0.86 -0.9
189,223 - EX28DRAFT_3981 0.86 -0.0
189,383 + -0.4
189,383 + +0.4
189,383 + -0.2
189,383 + -0.0
189,384 - +0.1
189,443 + EX28DRAFT_3982 0.15 -0.2
189,443 + EX28DRAFT_3982 0.15 -0.2

Or see this region's nucleotide sequence