Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3845

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3844 and EX28DRAFT_3845 overlap by 4 nucleotidesEX28DRAFT_3845 and EX28DRAFT_3846 are separated by 103 nucleotidesEX28DRAFT_3846 and EX28DRAFT_3847 are separated by 90 nucleotides EX28DRAFT_3844: EX28DRAFT_3844 - selenocysteine-specific elongation factor SelB, at 51,897 to 53,744 _3844 EX28DRAFT_3845: EX28DRAFT_3845 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 53,741 to 55,126 _3845 EX28DRAFT_3846: EX28DRAFT_3846 - Glutathione S-transferase, at 55,230 to 55,838 _3846 EX28DRAFT_3847: EX28DRAFT_3847 - Multidrug resistance efflux pump, at 55,929 to 57,065 _3847 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 52.769 kb on + strand, within EX28DRAFT_3844at 52.769 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.083 kb on - strand, within EX28DRAFT_3844at 53.083 kb on - strand, within EX28DRAFT_3844at 53.129 kb on + strand, within EX28DRAFT_3844at 53.136 kb on + strand, within EX28DRAFT_3844at 53.136 kb on + strand, within EX28DRAFT_3844at 53.196 kb on - strand, within EX28DRAFT_3844at 53.262 kb on + strand, within EX28DRAFT_3844at 53.338 kb on + strand, within EX28DRAFT_3844at 53.339 kb on - strand, within EX28DRAFT_3844at 53.579 kb on + strandat 53.579 kb on + strandat 53.580 kb on - strandat 53.615 kb on - strandat 53.615 kb on - strandat 53.738 kb on + strandat 53.738 kb on + strandat 53.739 kb on - strandat 53.814 kb on + strandat 53.815 kb on - strandat 53.815 kb on - strandat 53.995 kb on - strand, within EX28DRAFT_3845at 54.020 kb on + strand, within EX28DRAFT_3845at 54.020 kb on + strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.073 kb on + strand, within EX28DRAFT_3845at 54.073 kb on + strand, within EX28DRAFT_3845at 54.074 kb on - strand, within EX28DRAFT_3845at 54.310 kb on + strand, within EX28DRAFT_3845at 54.436 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.498 kb on + strand, within EX28DRAFT_3845at 54.545 kb on - strand, within EX28DRAFT_3845at 54.771 kb on + strand, within EX28DRAFT_3845at 54.772 kb on - strand, within EX28DRAFT_3845at 55.010 kb on + strandat 55.104 kb on + strandat 55.105 kb on - strandat 55.143 kb on + strandat 55.147 kb on + strandat 55.147 kb on + strandat 55.197 kb on - strandat 55.220 kb on - strandat 55.220 kb on - strandat 55.221 kb on + strandat 55.633 kb on + strand, within EX28DRAFT_3846at 55.633 kb on + strand, within EX28DRAFT_3846at 55.633 kb on + strand, within EX28DRAFT_3846at 55.634 kb on - strand, within EX28DRAFT_3846at 55.634 kb on - strand, within EX28DRAFT_3846at 55.663 kb on + strand, within EX28DRAFT_3846at 55.712 kb on - strand, within EX28DRAFT_3846at 55.739 kb on - strand, within EX28DRAFT_3846at 55.819 kb on + strandat 55.819 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.900 kb on - strandat 55.930 kb on + strandat 55.942 kb on + strandat 55.948 kb on + strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.978 kb on - strandat 55.982 kb on + strandat 56.017 kb on + strandat 56.035 kb on + strandat 56.035 kb on + strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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52,769 + EX28DRAFT_3844 0.47 -0.9
52,769 + EX28DRAFT_3844 0.47 +0.4
53,082 + EX28DRAFT_3844 0.64 -1.0
53,082 + EX28DRAFT_3844 0.64 +0.2
53,082 + EX28DRAFT_3844 0.64 -1.0
53,083 - EX28DRAFT_3844 0.64 -2.2
53,083 - EX28DRAFT_3844 0.64 -0.6
53,129 + EX28DRAFT_3844 0.67 -0.4
53,136 + EX28DRAFT_3844 0.67 -0.0
53,136 + EX28DRAFT_3844 0.67 -0.8
53,196 - EX28DRAFT_3844 0.70 -1.7
53,262 + EX28DRAFT_3844 0.74 -0.3
53,338 + EX28DRAFT_3844 0.78 +0.1
53,339 - EX28DRAFT_3844 0.78 -0.6
53,579 + -0.3
53,579 + -0.2
53,580 - +1.5
53,615 - +0.0
53,615 - +0.4
53,738 + -0.5
53,738 + -0.3
53,739 - +0.2
53,814 + -0.4
53,815 - +0.6
53,815 - +0.2
53,995 - EX28DRAFT_3845 0.18 -0.1
54,020 + EX28DRAFT_3845 0.20 -1.5
54,020 + EX28DRAFT_3845 0.20 -1.9
54,021 - EX28DRAFT_3845 0.20 -0.5
54,021 - EX28DRAFT_3845 0.20 -0.3
54,021 - EX28DRAFT_3845 0.20 -0.0
54,073 + EX28DRAFT_3845 0.24 -0.2
54,073 + EX28DRAFT_3845 0.24 -1.1
54,074 - EX28DRAFT_3845 0.24 -0.3
54,310 + EX28DRAFT_3845 0.41 -0.4
54,436 + EX28DRAFT_3845 0.50 +0.1
54,441 + EX28DRAFT_3845 0.51 +0.3
54,441 + EX28DRAFT_3845 0.51 -1.1
54,441 + EX28DRAFT_3845 0.51 +0.2
54,442 - EX28DRAFT_3845 0.51 +0.3
54,442 - EX28DRAFT_3845 0.51 -1.5
54,442 - EX28DRAFT_3845 0.51 +0.0
54,442 - EX28DRAFT_3845 0.51 +0.7
54,498 + EX28DRAFT_3845 0.55 -0.5
54,545 - EX28DRAFT_3845 0.58 -0.6
54,771 + EX28DRAFT_3845 0.74 -0.4
54,772 - EX28DRAFT_3845 0.74 +0.0
55,010 + -0.1
55,104 + +0.1
55,105 - +0.5
55,143 + -0.6
55,147 + +0.0
55,147 + +1.2
55,197 - +0.0
55,220 - +0.2
55,220 - +0.8
55,221 + -0.1
55,633 + EX28DRAFT_3846 0.66 +0.7
55,633 + EX28DRAFT_3846 0.66 +0.0
55,633 + EX28DRAFT_3846 0.66 +0.3
55,634 - EX28DRAFT_3846 0.66 -0.4
55,634 - EX28DRAFT_3846 0.66 +0.1
55,663 + EX28DRAFT_3846 0.71 -0.6
55,712 - EX28DRAFT_3846 0.79 -0.0
55,739 - EX28DRAFT_3846 0.84 -0.9
55,819 + +0.2
55,819 + -0.1
55,899 + -0.5
55,899 + +0.9
55,899 + +0.4
55,899 + +1.4
55,900 - -0.3
55,930 + +0.0
55,942 + +0.2
55,948 + +0.1
55,949 - +0.9
55,949 - +0.2
55,978 - -1.6
55,982 + -0.8
56,017 + -0.0
56,035 + +1.0
56,035 + -0.1
56,036 - +1.3
56,036 - -0.0
56,036 - -0.2
56,036 - +0.5
56,036 - +0.5
56,036 - -0.6
56,039 + +2.0

Or see this region's nucleotide sequence