Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3837 and EX28DRAFT_3838 are separated by 4 nucleotides EX28DRAFT_3838 and EX28DRAFT_3839 are separated by 93 nucleotides EX28DRAFT_3839 and EX28DRAFT_3840 are separated by 289 nucleotides
EX28DRAFT_3837: EX28DRAFT_3837 - valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66), at 44,470 to 45,726
_3837
EX28DRAFT_3838: EX28DRAFT_3838 - Fe-S-cluster-containing hydrogenase components 2, at 45,731 to 46,186
_3838
EX28DRAFT_3839: EX28DRAFT_3839 - Helix-turn-helix domain, at 46,280 to 46,691
_3839
EX28DRAFT_3840: EX28DRAFT_3840 - Uncharacterized conserved protein, at 46,981 to 48,057
_3840
Position (kb) 46
47 Strain fitness (log2 ratio) -1
0
1
2 at 45.397 kb on + strand, within EX28DRAFT_3837 at 45.397 kb on + strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.398 kb on - strand, within EX28DRAFT_3837 at 45.428 kb on + strand, within EX28DRAFT_3837 at 45.600 kb on + strand, within EX28DRAFT_3837 at 45.601 kb on - strand at 45.601 kb on - strand at 45.640 kb on + strand at 45.640 kb on + strand at 45.640 kb on + strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.641 kb on - strand at 45.842 kb on + strand, within EX28DRAFT_3838 at 45.842 kb on + strand, within EX28DRAFT_3838 at 45.843 kb on - strand, within EX28DRAFT_3838 at 45.868 kb on + strand, within EX28DRAFT_3838 at 45.868 kb on + strand, within EX28DRAFT_3838 at 45.869 kb on - strand, within EX28DRAFT_3838 at 45.916 kb on + strand, within EX28DRAFT_3838 at 45.916 kb on + strand, within EX28DRAFT_3838 at 46.047 kb on + strand, within EX28DRAFT_3838 at 46.048 kb on - strand, within EX28DRAFT_3838 at 46.207 kb on + strand at 46.207 kb on + strand at 46.207 kb on + strand at 46.231 kb on + strand at 46.231 kb on + strand at 46.232 kb on - strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.291 kb on + strand at 46.292 kb on - strand at 46.294 kb on + strand at 46.294 kb on + strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.308 kb on + strand at 46.334 kb on + strand, within EX28DRAFT_3839 at 46.506 kb on + strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.520 kb on - strand, within EX28DRAFT_3839 at 46.671 kb on + strand at 46.672 kb on - strand at 46.710 kb on - strand at 46.721 kb on + strand at 46.773 kb on + strand at 46.773 kb on + strand at 46.774 kb on - strand at 46.783 kb on + strand at 46.784 kb on - strand at 46.837 kb on + strand at 46.846 kb on - strand at 46.914 kb on + strand at 46.936 kb on + strand at 46.937 kb on - strand at 47.021 kb on + strand at 47.443 kb on - strand, within EX28DRAFT_3840 at 47.590 kb on - strand, within EX28DRAFT_3840 at 47.676 kb on + strand, within EX28DRAFT_3840 at 47.685 kb on + strand, within EX28DRAFT_3840
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 45,397 + EX28DRAFT_3837 0.74 +0.3 45,397 + EX28DRAFT_3837 0.74 -0.1 45,398 - EX28DRAFT_3837 0.74 -0.4 45,398 - EX28DRAFT_3837 0.74 -0.4 45,398 - EX28DRAFT_3837 0.74 +0.9 45,428 + EX28DRAFT_3837 0.76 +0.5 45,600 + EX28DRAFT_3837 0.90 +0.5 45,601 - +0.2 45,601 - +0.6 45,640 + +0.5 45,640 + +1.5 45,640 + +0.6 45,641 - -0.9 45,641 - +1.0 45,641 - -0.1 45,641 - +0.1 45,641 - +1.3 45,641 - +0.6 45,641 - -1.5 45,641 - +0.8 45,641 - -0.4 45,842 + EX28DRAFT_3838 0.24 +0.3 45,842 + EX28DRAFT_3838 0.24 -0.4 45,843 - EX28DRAFT_3838 0.25 -0.3 45,868 + EX28DRAFT_3838 0.30 +0.8 45,868 + EX28DRAFT_3838 0.30 +0.0 45,869 - EX28DRAFT_3838 0.30 +0.7 45,916 + EX28DRAFT_3838 0.41 -0.0 45,916 + EX28DRAFT_3838 0.41 +0.4 46,047 + EX28DRAFT_3838 0.69 +0.2 46,048 - EX28DRAFT_3838 0.70 -1.0 46,207 + -0.4 46,207 + +1.0 46,207 + -0.1 46,231 + +0.3 46,231 + -1.1 46,232 - +1.1 46,270 + +0.2 46,270 + -0.5 46,270 + +0.2 46,270 + +0.1 46,291 + +0.2 46,292 - +0.2 46,294 + +0.1 46,294 + +0.1 46,295 - +0.1 46,295 - -0.3 46,295 - +0.0 46,308 + +0.8 46,334 + EX28DRAFT_3839 0.13 -0.1 46,506 + EX28DRAFT_3839 0.55 +0.4 46,507 - EX28DRAFT_3839 0.55 -0.2 46,507 - EX28DRAFT_3839 0.55 +1.2 46,519 + EX28DRAFT_3839 0.58 +0.8 46,519 + EX28DRAFT_3839 0.58 -0.1 46,520 - EX28DRAFT_3839 0.58 +0.9 46,671 + +2.6 46,672 - +0.4 46,710 - +1.5 46,721 + -0.3 46,773 + -0.9 46,773 + +0.1 46,774 - +0.8 46,783 + +0.0 46,784 - +0.5 46,837 + -0.2 46,846 - +0.3 46,914 + -0.3 46,936 + +1.6 46,937 - -0.8 47,021 + -0.4 47,443 - EX28DRAFT_3840 0.43 -1.4 47,590 - EX28DRAFT_3840 0.57 +0.0 47,676 + EX28DRAFT_3840 0.65 +0.7 47,685 + EX28DRAFT_3840 0.65 +0.5
Or see this region's nucleotide sequence