Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3717 and EX28DRAFT_3718 are separated by 0 nucleotides EX28DRAFT_3718 and EX28DRAFT_3719 are separated by 114 nucleotides EX28DRAFT_3719 and EX28DRAFT_3720 are separated by 67 nucleotides
EX28DRAFT_3717: EX28DRAFT_3717 - S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form, at 392,417 to 393,211
_3717
EX28DRAFT_3718: EX28DRAFT_3718 - spermidine synthase, at 393,212 to 394,081
_3718
EX28DRAFT_3719: EX28DRAFT_3719 - Bacterial chaperone lipoprotein (PulS_OutS), at 394,196 to 394,582
_3719
EX28DRAFT_3720: EX28DRAFT_3720 - Putative multicopper oxidases, at 394,650 to 396,257
_3720
Position (kb) 394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 393.199 kb on + strand at 393.226 kb on + strand at 393.249 kb on + strand at 393.274 kb on + strand at 393.292 kb on - strand at 393.347 kb on + strand, within EX28DRAFT_3718 at 393.347 kb on + strand, within EX28DRAFT_3718 at 393.348 kb on - strand, within EX28DRAFT_3718 at 393.402 kb on + strand, within EX28DRAFT_3718 at 393.402 kb on + strand, within EX28DRAFT_3718 at 393.403 kb on - strand, within EX28DRAFT_3718 at 393.447 kb on + strand, within EX28DRAFT_3718 at 393.448 kb on - strand, within EX28DRAFT_3718 at 393.559 kb on - strand, within EX28DRAFT_3718 at 393.571 kb on + strand, within EX28DRAFT_3718 at 393.619 kb on + strand, within EX28DRAFT_3718 at 393.619 kb on + strand, within EX28DRAFT_3718 at 393.696 kb on + strand, within EX28DRAFT_3718 at 393.696 kb on + strand, within EX28DRAFT_3718 at 393.697 kb on - strand, within EX28DRAFT_3718 at 393.724 kb on - strand, within EX28DRAFT_3718 at 393.767 kb on - strand, within EX28DRAFT_3718 at 393.767 kb on - strand, within EX28DRAFT_3718 at 393.895 kb on - strand, within EX28DRAFT_3718 at 393.898 kb on + strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 394.006 kb on - strand at 394.006 kb on - strand at 394.029 kb on + strand at 394.029 kb on + strand at 394.099 kb on + strand at 394.099 kb on + strand at 394.100 kb on - strand at 394.111 kb on - strand at 394.139 kb on + strand at 394.144 kb on - strand at 394.144 kb on - strand at 394.144 kb on - strand at 394.198 kb on - strand at 394.453 kb on + strand, within EX28DRAFT_3719 at 394.482 kb on + strand, within EX28DRAFT_3719 at 394.483 kb on - strand, within EX28DRAFT_3719 at 394.551 kb on - strand at 394.582 kb on + strand at 394.582 kb on + strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.745 kb on - strand at 395.349 kb on + strand, within EX28DRAFT_3720 at 395.350 kb on - strand, within EX28DRAFT_3720 at 395.452 kb on - strand, within EX28DRAFT_3720 at 395.546 kb on + strand, within EX28DRAFT_3720
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 393,199 + +0.3 393,226 + -0.0 393,249 + +0.4 393,274 + -0.7 393,292 - -0.6 393,347 + EX28DRAFT_3718 0.16 -0.6 393,347 + EX28DRAFT_3718 0.16 -0.7 393,348 - EX28DRAFT_3718 0.16 +0.8 393,402 + EX28DRAFT_3718 0.22 +0.1 393,402 + EX28DRAFT_3718 0.22 -0.9 393,403 - EX28DRAFT_3718 0.22 +1.2 393,447 + EX28DRAFT_3718 0.27 -2.2 393,448 - EX28DRAFT_3718 0.27 +0.8 393,559 - EX28DRAFT_3718 0.40 +0.4 393,571 + EX28DRAFT_3718 0.41 -0.1 393,619 + EX28DRAFT_3718 0.47 -2.5 393,619 + EX28DRAFT_3718 0.47 -2.4 393,696 + EX28DRAFT_3718 0.56 +0.8 393,696 + EX28DRAFT_3718 0.56 -1.3 393,697 - EX28DRAFT_3718 0.56 +0.3 393,724 - EX28DRAFT_3718 0.59 -0.4 393,767 - EX28DRAFT_3718 0.64 -0.5 393,767 - EX28DRAFT_3718 0.64 -0.4 393,895 - EX28DRAFT_3718 0.79 -0.1 393,898 + EX28DRAFT_3718 0.79 -0.1 393,899 - EX28DRAFT_3718 0.79 +0.6 393,899 - EX28DRAFT_3718 0.79 -0.4 393,899 - EX28DRAFT_3718 0.79 -0.2 394,006 - -0.5 394,006 - -0.2 394,029 + -0.2 394,029 + -0.5 394,099 + -0.7 394,099 + +1.3 394,100 - +0.3 394,111 - -0.7 394,139 + +0.3 394,144 - +0.2 394,144 - +0.2 394,144 - +0.3 394,198 - -2.2 394,453 + EX28DRAFT_3719 0.66 +0.6 394,482 + EX28DRAFT_3719 0.74 +0.6 394,483 - EX28DRAFT_3719 0.74 +0.9 394,551 - -0.1 394,582 + +0.4 394,582 + -0.2 394,583 - -1.8 394,583 - -0.1 394,583 - -0.3 394,583 - +0.4 394,745 - +1.0 395,349 + EX28DRAFT_3720 0.43 +0.7 395,350 - EX28DRAFT_3720 0.44 +0.2 395,452 - EX28DRAFT_3720 0.50 -0.1 395,546 + EX28DRAFT_3720 0.56 +1.0
Or see this region's nucleotide sequence