Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3654 and EX28DRAFT_3655 are separated by 10 nucleotides EX28DRAFT_3655 and EX28DRAFT_3656 are separated by 337 nucleotides
EX28DRAFT_3654: EX28DRAFT_3654 - L-arabinose isomerase, at 320,023 to 321,525
_3654
EX28DRAFT_3655: EX28DRAFT_3655 - ribulokinase, at 321,536 to 323,245
_3655
EX28DRAFT_3656: EX28DRAFT_3656 - AraC-type DNA-binding domain-containing proteins, at 323,583 to 324,428
_3656
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 321.018 kb on + strand, within EX28DRAFT_3654 at 321.048 kb on + strand, within EX28DRAFT_3654 at 321.282 kb on + strand, within EX28DRAFT_3654 at 321.282 kb on + strand, within EX28DRAFT_3654 at 321.283 kb on - strand, within EX28DRAFT_3654 at 321.312 kb on + strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.639 kb on + strand at 322.221 kb on + strand, within EX28DRAFT_3655 at 322.222 kb on - strand, within EX28DRAFT_3655 at 322.222 kb on - strand, within EX28DRAFT_3655 at 322.226 kb on - strand, within EX28DRAFT_3655 at 322.539 kb on + strand, within EX28DRAFT_3655 at 322.539 kb on + strand, within EX28DRAFT_3655 at 322.540 kb on - strand, within EX28DRAFT_3655 at 322.794 kb on + strand, within EX28DRAFT_3655 at 322.795 kb on - strand, within EX28DRAFT_3655 at 322.818 kb on + strand, within EX28DRAFT_3655 at 323.072 kb on + strand, within EX28DRAFT_3655 at 323.072 kb on + strand, within EX28DRAFT_3655 at 323.072 kb on + strand, within EX28DRAFT_3655 at 323.073 kb on - strand, within EX28DRAFT_3655 at 323.073 kb on - strand, within EX28DRAFT_3655 at 323.074 kb on + strand, within EX28DRAFT_3655 at 323.074 kb on + strand, within EX28DRAFT_3655 at 323.074 kb on + strand, within EX28DRAFT_3655 at 323.074 kb on + strand, within EX28DRAFT_3655 at 323.075 kb on - strand at 323.076 kb on + strand at 323.165 kb on + strand at 323.183 kb on - strand at 323.401 kb on + strand at 323.477 kb on + strand at 323.478 kb on - strand at 323.521 kb on + strand at 323.532 kb on + strand at 323.716 kb on - strand, within EX28DRAFT_3656 at 323.826 kb on + strand, within EX28DRAFT_3656 at 324.041 kb on + strand, within EX28DRAFT_3656 at 324.135 kb on + strand, within EX28DRAFT_3656 at 324.135 kb on + strand, within EX28DRAFT_3656 at 324.136 kb on - strand, within EX28DRAFT_3656 at 324.136 kb on - strand, within EX28DRAFT_3656
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 321,018 + EX28DRAFT_3654 0.66 -1.5 321,048 + EX28DRAFT_3654 0.68 -0.5 321,282 + EX28DRAFT_3654 0.84 -1.3 321,282 + EX28DRAFT_3654 0.84 -0.2 321,283 - EX28DRAFT_3654 0.84 -0.2 321,312 + EX28DRAFT_3654 0.86 +0.6 321,321 - EX28DRAFT_3654 0.86 +0.5 321,321 - EX28DRAFT_3654 0.86 +0.1 321,321 - EX28DRAFT_3654 0.86 +1.0 321,506 + -0.6 321,506 + +0.1 321,506 + +0.8 321,506 + +0.3 321,506 + -1.8 321,506 + -0.4 321,506 + +0.3 321,506 + -0.2 321,506 + +0.2 321,507 - -0.1 321,507 - +0.4 321,507 - +0.0 321,507 - +0.2 321,507 - +0.7 321,639 + +0.1 322,221 + EX28DRAFT_3655 0.40 -0.1 322,222 - EX28DRAFT_3655 0.40 -1.4 322,222 - EX28DRAFT_3655 0.40 -0.3 322,226 - EX28DRAFT_3655 0.40 +0.2 322,539 + EX28DRAFT_3655 0.59 -0.2 322,539 + EX28DRAFT_3655 0.59 +1.2 322,540 - EX28DRAFT_3655 0.59 -0.4 322,794 + EX28DRAFT_3655 0.74 -0.0 322,795 - EX28DRAFT_3655 0.74 +1.3 322,818 + EX28DRAFT_3655 0.75 +0.3 323,072 + EX28DRAFT_3655 0.90 +0.7 323,072 + EX28DRAFT_3655 0.90 +0.4 323,072 + EX28DRAFT_3655 0.90 -0.2 323,073 - EX28DRAFT_3655 0.90 +1.1 323,073 - EX28DRAFT_3655 0.90 -0.5 323,074 + EX28DRAFT_3655 0.90 +1.5 323,074 + EX28DRAFT_3655 0.90 +0.3 323,074 + EX28DRAFT_3655 0.90 +0.3 323,074 + EX28DRAFT_3655 0.90 +0.2 323,075 - +0.0 323,076 + -0.4 323,165 + -0.1 323,183 - +0.6 323,401 + +0.9 323,477 + +0.1 323,478 - +0.1 323,521 + +0.1 323,532 + +1.7 323,716 - EX28DRAFT_3656 0.16 +0.2 323,826 + EX28DRAFT_3656 0.29 -1.1 324,041 + EX28DRAFT_3656 0.54 -1.2 324,135 + EX28DRAFT_3656 0.65 -0.2 324,135 + EX28DRAFT_3656 0.65 -1.0 324,136 - EX28DRAFT_3656 0.65 -0.1 324,136 - EX28DRAFT_3656 0.65 +0.0
Or see this region's nucleotide sequence