Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3610

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3609 and EX28DRAFT_3610 are separated by 56 nucleotidesEX28DRAFT_3610 and EX28DRAFT_3611 are separated by 46 nucleotides EX28DRAFT_3609: EX28DRAFT_3609 - Signal transduction histidine kinase, at 267,088 to 268,512 _3609 EX28DRAFT_3610: EX28DRAFT_3610 - Inner membrane protein involved in colicin E2 resistance, at 268,569 to 269,921 _3610 EX28DRAFT_3611: EX28DRAFT_3611 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 269,968 to 270,684 _3611 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1at 267.595 kb on - strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.721 kb on - strand, within EX28DRAFT_3609at 267.774 kb on + strand, within EX28DRAFT_3609at 267.822 kb on + strand, within EX28DRAFT_3609at 267.850 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.976 kb on - strand, within EX28DRAFT_3609at 268.056 kb on + strand, within EX28DRAFT_3609at 268.057 kb on - strand, within EX28DRAFT_3609at 268.341 kb on + strand, within EX28DRAFT_3609at 268.446 kb on + strandat 268.446 kb on + strandat 268.446 kb on + strandat 268.447 kb on - strandat 268.447 kb on - strandat 268.510 kb on + strandat 268.567 kb on + strandat 268.568 kb on - strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.598 kb on - strandat 268.598 kb on - strandat 268.643 kb on + strandat 268.644 kb on - strandat 268.653 kb on - strandat 268.697 kb on + strandat 268.698 kb on - strandat 268.773 kb on + strand, within EX28DRAFT_3610at 268.773 kb on + strand, within EX28DRAFT_3610at 268.780 kb on + strand, within EX28DRAFT_3610at 268.780 kb on + strand, within EX28DRAFT_3610at 268.803 kb on + strand, within EX28DRAFT_3610at 268.804 kb on - strand, within EX28DRAFT_3610at 268.804 kb on - strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.817 kb on + strand, within EX28DRAFT_3610at 268.817 kb on + strand, within EX28DRAFT_3610at 268.818 kb on - strand, within EX28DRAFT_3610at 268.856 kb on + strand, within EX28DRAFT_3610at 268.890 kb on + strand, within EX28DRAFT_3610at 268.924 kb on + strand, within EX28DRAFT_3610at 268.925 kb on - strand, within EX28DRAFT_3610at 268.925 kb on - strand, within EX28DRAFT_3610at 269.046 kb on - strand, within EX28DRAFT_3610at 269.216 kb on + strand, within EX28DRAFT_3610at 269.217 kb on - strand, within EX28DRAFT_3610at 269.272 kb on - strand, within EX28DRAFT_3610at 269.272 kb on - strand, within EX28DRAFT_3610at 269.282 kb on + strand, within EX28DRAFT_3610at 269.342 kb on + strand, within EX28DRAFT_3610at 269.343 kb on - strand, within EX28DRAFT_3610at 269.544 kb on + strand, within EX28DRAFT_3610at 269.577 kb on + strand, within EX28DRAFT_3610at 269.578 kb on - strand, within EX28DRAFT_3610at 269.667 kb on + strand, within EX28DRAFT_3610at 269.667 kb on + strand, within EX28DRAFT_3610at 269.667 kb on + strand, within EX28DRAFT_3610at 269.824 kb on - strandat 269.847 kb on + strandat 269.900 kb on + strandat 269.901 kb on - strandat 269.956 kb on + strandat 269.969 kb on + strandat 270.064 kb on - strand, within EX28DRAFT_3611at 270.786 kb on - strandat 270.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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267,595 - EX28DRAFT_3609 0.36 -0.0
267,714 + EX28DRAFT_3609 0.44 -1.2
267,714 + EX28DRAFT_3609 0.44 -0.1
267,720 + EX28DRAFT_3609 0.44 -2.3
267,720 + EX28DRAFT_3609 0.44 +0.1
267,721 - EX28DRAFT_3609 0.44 +0.1
267,774 + EX28DRAFT_3609 0.48 -0.7
267,822 + EX28DRAFT_3609 0.52 +0.7
267,850 + EX28DRAFT_3609 0.53 +0.3
267,862 + EX28DRAFT_3609 0.54 +0.6
267,862 + EX28DRAFT_3609 0.54 -0.3
267,863 - EX28DRAFT_3609 0.54 +0.2
267,863 - EX28DRAFT_3609 0.54 +0.0
267,863 - EX28DRAFT_3609 0.54 -0.5
267,863 - EX28DRAFT_3609 0.54 -0.5
267,863 - EX28DRAFT_3609 0.54 -0.0
267,863 - EX28DRAFT_3609 0.54 +0.5
267,976 - EX28DRAFT_3609 0.62 +0.9
268,056 + EX28DRAFT_3609 0.68 -0.3
268,057 - EX28DRAFT_3609 0.68 +0.1
268,341 + EX28DRAFT_3609 0.88 -0.1
268,446 + +0.8
268,446 + -0.5
268,446 + -0.4
268,447 - -0.2
268,447 - -0.5
268,510 + +0.5
268,567 + +0.2
268,568 - -1.9
268,597 + +0.6
268,597 + +0.0
268,597 + +0.2
268,597 + -0.9
268,598 - +0.2
268,598 - -0.1
268,643 + +0.1
268,644 - -0.8
268,653 - -1.7
268,697 + +1.7
268,698 - +0.2
268,773 + EX28DRAFT_3610 0.15 -1.2
268,773 + EX28DRAFT_3610 0.15 -0.7
268,780 + EX28DRAFT_3610 0.16 +0.2
268,780 + EX28DRAFT_3610 0.16 -0.1
268,803 + EX28DRAFT_3610 0.17 -0.1
268,804 - EX28DRAFT_3610 0.17 +0.7
268,804 - EX28DRAFT_3610 0.17 -1.4
268,815 + EX28DRAFT_3610 0.18 +0.2
268,815 + EX28DRAFT_3610 0.18 +0.3
268,815 + EX28DRAFT_3610 0.18 -0.1
268,815 + EX28DRAFT_3610 0.18 -0.3
268,817 + EX28DRAFT_3610 0.18 -1.3
268,817 + EX28DRAFT_3610 0.18 -0.1
268,818 - EX28DRAFT_3610 0.18 -1.1
268,856 + EX28DRAFT_3610 0.21 -0.0
268,890 + EX28DRAFT_3610 0.24 +0.3
268,924 + EX28DRAFT_3610 0.26 -0.0
268,925 - EX28DRAFT_3610 0.26 +0.6
268,925 - EX28DRAFT_3610 0.26 -0.0
269,046 - EX28DRAFT_3610 0.35 -2.0
269,216 + EX28DRAFT_3610 0.48 -0.2
269,217 - EX28DRAFT_3610 0.48 -0.0
269,272 - EX28DRAFT_3610 0.52 +0.9
269,272 - EX28DRAFT_3610 0.52 -0.8
269,282 + EX28DRAFT_3610 0.53 +0.6
269,342 + EX28DRAFT_3610 0.57 -1.0
269,343 - EX28DRAFT_3610 0.57 -0.1
269,544 + EX28DRAFT_3610 0.72 +1.3
269,577 + EX28DRAFT_3610 0.75 -0.7
269,578 - EX28DRAFT_3610 0.75 -0.6
269,667 + EX28DRAFT_3610 0.81 +0.3
269,667 + EX28DRAFT_3610 0.81 +0.0
269,667 + EX28DRAFT_3610 0.81 -0.3
269,824 - -0.3
269,847 + +0.3
269,900 + -0.2
269,901 - -0.3
269,956 + +0.0
269,969 + -0.3
270,064 - EX28DRAFT_3611 0.13 -0.3
270,786 - +0.5
270,795 - -0.7

Or see this region's nucleotide sequence