Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3581 and EX28DRAFT_3582 are separated by 20 nucleotides EX28DRAFT_3582 and EX28DRAFT_3583 are separated by 91 nucleotides EX28DRAFT_3583 and EX28DRAFT_3584 are separated by 299 nucleotides
EX28DRAFT_3581: EX28DRAFT_3581 - ribosomal-protein-alanine acetyltransferase, at 238,680 to 239,123
_3581
EX28DRAFT_3582: EX28DRAFT_3582 - noncanonical pyrimidine nucleotidase, YjjG family, at 239,144 to 239,821
_3582
EX28DRAFT_3583: EX28DRAFT_3583 - peptide chain release factor 3, at 239,913 to 241,502
_3583
EX28DRAFT_3584: EX28DRAFT_3584 - Predicted periplasmic or secreted lipoprotein, at 241,802 to 242,419
_3584
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.060 kb on + strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.131 kb on + strand at 239.132 kb on - strand at 239.188 kb on + strand at 239.189 kb on - strand at 239.189 kb on - strand at 239.367 kb on + strand, within EX28DRAFT_3582 at 239.586 kb on + strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.590 kb on + strand, within EX28DRAFT_3582 at 239.636 kb on - strand, within EX28DRAFT_3582 at 239.844 kb on + strand at 239.895 kb on - strand at 239.928 kb on + strand at 239.929 kb on - strand at 240.206 kb on + strand, within EX28DRAFT_3583 at 240.459 kb on + strand, within EX28DRAFT_3583 at 240.460 kb on - strand, within EX28DRAFT_3583 at 240.460 kb on - strand, within EX28DRAFT_3583 at 240.468 kb on + strand, within EX28DRAFT_3583 at 240.484 kb on - strand, within EX28DRAFT_3583 at 240.881 kb on + strand, within EX28DRAFT_3583 at 241.367 kb on + strand at 241.419 kb on + strand at 241.419 kb on + strand at 241.419 kb on + strand at 241.420 kb on - strand at 241.500 kb on + strand at 241.576 kb on + strand at 241.647 kb on + strand at 241.647 kb on + strand at 241.648 kb on - strand at 241.653 kb on + strand at 241.686 kb on + strand at 241.746 kb on + strand at 241.764 kb on - strand at 241.764 kb on - strand at 241.764 kb on - strand at 241.767 kb on + strand at 241.951 kb on + strand, within EX28DRAFT_3584 at 241.957 kb on + strand, within EX28DRAFT_3584 at 241.957 kb on + strand, within EX28DRAFT_3584 at 241.958 kb on - strand, within EX28DRAFT_3584 at 241.958 kb on - strand, within EX28DRAFT_3584 at 241.958 kb on - strand, within EX28DRAFT_3584 at 242.175 kb on + strand, within EX28DRAFT_3584 at 242.175 kb on + strand, within EX28DRAFT_3584 at 242.176 kb on - strand, within EX28DRAFT_3584 at 242.176 kb on - strand, within EX28DRAFT_3584 at 242.207 kb on + strand, within EX28DRAFT_3584 at 242.227 kb on + strand, within EX28DRAFT_3584 at 242.227 kb on + strand, within EX28DRAFT_3584 at 242.289 kb on + strand, within EX28DRAFT_3584 at 242.289 kb on + strand, within EX28DRAFT_3584 at 242.289 kb on + strand, within EX28DRAFT_3584 at 242.289 kb on + strand, within EX28DRAFT_3584 at 242.418 kb on - strand at 242.462 kb on + strand at 242.463 kb on - strand at 242.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 239,060 + EX28DRAFT_3581 0.86 -0.1 239,065 - EX28DRAFT_3581 0.87 +0.2 239,065 - EX28DRAFT_3581 0.87 +0.5 239,131 + +0.2 239,132 - -0.7 239,188 + -0.3 239,189 - +0.7 239,189 - -0.4 239,367 + EX28DRAFT_3582 0.33 +0.5 239,586 + EX28DRAFT_3582 0.65 -0.2 239,587 - EX28DRAFT_3582 0.65 -0.2 239,587 - EX28DRAFT_3582 0.65 -0.3 239,590 + EX28DRAFT_3582 0.66 -0.3 239,636 - EX28DRAFT_3582 0.73 -1.8 239,844 + +0.1 239,895 - +0.2 239,928 + -0.4 239,929 - +0.8 240,206 + EX28DRAFT_3583 0.18 +0.6 240,459 + EX28DRAFT_3583 0.34 +1.4 240,460 - EX28DRAFT_3583 0.34 +1.0 240,460 - EX28DRAFT_3583 0.34 -0.5 240,468 + EX28DRAFT_3583 0.35 +0.7 240,484 - EX28DRAFT_3583 0.36 +0.5 240,881 + EX28DRAFT_3583 0.61 +1.2 241,367 + -2.8 241,419 + -2.0 241,419 + +0.4 241,419 + -0.4 241,420 - +0.4 241,500 + +0.9 241,576 + +0.1 241,647 + +0.5 241,647 + -0.0 241,648 - +0.2 241,653 + +0.7 241,686 + -0.3 241,746 + +0.6 241,764 - -0.0 241,764 - -2.1 241,764 - -3.7 241,767 + -0.2 241,951 + EX28DRAFT_3584 0.24 +0.4 241,957 + EX28DRAFT_3584 0.25 +0.1 241,957 + EX28DRAFT_3584 0.25 -0.6 241,958 - EX28DRAFT_3584 0.25 +0.3 241,958 - EX28DRAFT_3584 0.25 -1.1 241,958 - EX28DRAFT_3584 0.25 -1.1 242,175 + EX28DRAFT_3584 0.60 +0.8 242,175 + EX28DRAFT_3584 0.60 +1.4 242,176 - EX28DRAFT_3584 0.61 -1.3 242,176 - EX28DRAFT_3584 0.61 -1.5 242,207 + EX28DRAFT_3584 0.66 -0.3 242,227 + EX28DRAFT_3584 0.69 +0.1 242,227 + EX28DRAFT_3584 0.69 +0.6 242,289 + EX28DRAFT_3584 0.79 -0.7 242,289 + EX28DRAFT_3584 0.79 +1.0 242,289 + EX28DRAFT_3584 0.79 +0.7 242,289 + EX28DRAFT_3584 0.79 +0.3 242,418 - -0.3 242,462 + -0.1 242,463 - +1.8 242,463 - +1.0
Or see this region's nucleotide sequence