Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3568 and EX28DRAFT_3569 overlap by 55 nucleotides EX28DRAFT_3569 and EX28DRAFT_3570 are separated by 38 nucleotides EX28DRAFT_3570 and EX28DRAFT_3571 are separated by 328 nucleotides
EX28DRAFT_3568: EX28DRAFT_3568 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 230,443 to 231,180
_3568
EX28DRAFT_3569: EX28DRAFT_3569 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 231,126 to 231,812
_3569
EX28DRAFT_3570: EX28DRAFT_3570 - Uncharacterized conserved protein, at 231,851 to 232,309
_3570
EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984
_3571
Position (kb) 231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 230.152 kb on + strand at 230.153 kb on - strand at 230.198 kb on - strand at 230.319 kb on + strand at 230.330 kb on + strand at 230.350 kb on + strand at 230.351 kb on - strand at 230.388 kb on + strand at 230.404 kb on - strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.466 kb on + strand at 230.467 kb on - strand at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.574 kb on - strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.742 kb on - strand, within EX28DRAFT_3568 at 230.818 kb on - strand, within EX28DRAFT_3568 at 230.924 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.937 kb on - strand, within EX28DRAFT_3568 at 230.940 kb on + strand, within EX28DRAFT_3568 at 230.941 kb on - strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 231.043 kb on - strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.056 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.109 kb on + strand at 231.152 kb on + strand at 231.152 kb on + strand at 231.153 kb on - strand at 231.257 kb on + strand, within EX28DRAFT_3569 at 231.258 kb on - strand, within EX28DRAFT_3569 at 231.263 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.392 kb on + strand, within EX28DRAFT_3569 at 231.425 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.666 kb on - strand, within EX28DRAFT_3569 at 231.684 kb on - strand, within EX28DRAFT_3569 at 231.725 kb on - strand, within EX28DRAFT_3569 at 231.749 kb on + strand at 231.749 kb on + strand at 231.749 kb on + strand at 231.750 kb on - strand at 231.794 kb on + strand at 231.795 kb on - strand at 231.808 kb on + strand at 231.808 kb on + strand at 231.910 kb on + strand, within EX28DRAFT_3570 at 231.910 kb on + strand, within EX28DRAFT_3570 at 232.016 kb on + strand, within EX28DRAFT_3570 at 232.017 kb on - strand, within EX28DRAFT_3570 at 232.235 kb on - strand, within EX28DRAFT_3570 at 232.259 kb on + strand, within EX28DRAFT_3570 at 232.261 kb on + strand, within EX28DRAFT_3570 at 232.293 kb on - strand at 232.328 kb on - strand at 232.328 kb on - strand at 232.364 kb on - strand at 232.367 kb on + strand at 232.386 kb on - strand at 232.469 kb on + strand at 232.472 kb on + strand at 232.479 kb on + strand at 232.479 kb on + strand at 232.480 kb on - strand at 232.483 kb on + strand at 232.484 kb on - strand at 232.496 kb on - strand at 232.505 kb on + strand at 232.506 kb on - strand at 232.506 kb on - strand at 232.506 kb on - strand at 232.517 kb on - strand at 232.580 kb on + strand at 232.580 kb on + strand at 232.690 kb on - strand at 232.754 kb on + strand at 232.754 kb on + strand at 232.755 kb on - strand at 232.773 kb on - strand, within EX28DRAFT_3571 at 232.773 kb on - strand, within EX28DRAFT_3571
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 230,152 + +1.0 230,153 - +0.2 230,198 - -0.2 230,319 + +0.1 230,330 + -1.1 230,350 + -0.7 230,351 - -0.7 230,388 + +0.2 230,404 - +0.4 230,442 + +0.0 230,442 + +0.5 230,442 + +0.3 230,442 + -0.2 230,442 + +0.7 230,443 - -0.3 230,443 - +0.5 230,443 - -0.8 230,443 - +0.5 230,466 + -0.1 230,467 - -0.9 230,551 + EX28DRAFT_3568 0.15 +0.8 230,551 + EX28DRAFT_3568 0.15 -0.3 230,574 - EX28DRAFT_3568 0.18 +0.5 230,741 + EX28DRAFT_3568 0.40 +0.6 230,741 + EX28DRAFT_3568 0.40 +0.4 230,742 - EX28DRAFT_3568 0.41 -0.8 230,818 - EX28DRAFT_3568 0.51 -0.5 230,924 + EX28DRAFT_3568 0.65 -2.9 230,936 + EX28DRAFT_3568 0.67 +0.9 230,936 + EX28DRAFT_3568 0.67 +0.6 230,937 - EX28DRAFT_3568 0.67 +1.1 230,940 + EX28DRAFT_3568 0.67 +0.7 230,941 - EX28DRAFT_3568 0.67 +0.8 230,988 + EX28DRAFT_3568 0.74 -0.6 230,988 + EX28DRAFT_3568 0.74 -0.5 231,043 - EX28DRAFT_3568 0.81 +0.7 231,055 + EX28DRAFT_3568 0.83 +0.1 231,055 + EX28DRAFT_3568 0.83 -0.6 231,056 - EX28DRAFT_3568 0.83 +0.6 231,073 - EX28DRAFT_3568 0.85 +0.5 231,073 - EX28DRAFT_3568 0.85 +0.5 231,109 + +0.4 231,152 + +0.9 231,152 + -0.1 231,153 - -0.2 231,257 + EX28DRAFT_3569 0.19 +0.6 231,258 - EX28DRAFT_3569 0.19 -2.9 231,263 + EX28DRAFT_3569 0.20 -0.5 231,303 + EX28DRAFT_3569 0.26 +1.1 231,303 + EX28DRAFT_3569 0.26 -0.3 231,304 - EX28DRAFT_3569 0.26 -0.1 231,304 - EX28DRAFT_3569 0.26 -1.7 231,304 - EX28DRAFT_3569 0.26 -0.1 231,304 - EX28DRAFT_3569 0.26 +0.2 231,392 + EX28DRAFT_3569 0.39 -0.4 231,425 - EX28DRAFT_3569 0.44 -1.3 231,543 - EX28DRAFT_3569 0.61 -0.1 231,543 - EX28DRAFT_3569 0.61 +0.0 231,543 - EX28DRAFT_3569 0.61 -1.6 231,609 + EX28DRAFT_3569 0.70 -0.6 231,609 + EX28DRAFT_3569 0.70 +1.1 231,609 + EX28DRAFT_3569 0.70 +0.1 231,611 + EX28DRAFT_3569 0.71 -0.4 231,611 + EX28DRAFT_3569 0.71 -0.1 231,612 - EX28DRAFT_3569 0.71 -4.3 231,612 - EX28DRAFT_3569 0.71 -0.3 231,612 - EX28DRAFT_3569 0.71 -1.1 231,612 - EX28DRAFT_3569 0.71 -3.5 231,612 - EX28DRAFT_3569 0.71 +0.1 231,665 + EX28DRAFT_3569 0.78 +0.5 231,665 + EX28DRAFT_3569 0.78 -0.1 231,665 + EX28DRAFT_3569 0.78 +0.3 231,666 - EX28DRAFT_3569 0.79 +0.4 231,684 - EX28DRAFT_3569 0.81 +0.3 231,725 - EX28DRAFT_3569 0.87 -0.7 231,749 + +0.2 231,749 + -0.5 231,749 + -0.1 231,750 - -2.9 231,794 + -1.5 231,795 - +0.6 231,808 + +0.2 231,808 + -1.8 231,910 + EX28DRAFT_3570 0.13 -0.2 231,910 + EX28DRAFT_3570 0.13 +0.5 232,016 + EX28DRAFT_3570 0.36 +0.1 232,017 - EX28DRAFT_3570 0.36 -0.2 232,235 - EX28DRAFT_3570 0.84 -0.6 232,259 + EX28DRAFT_3570 0.89 -1.8 232,261 + EX28DRAFT_3570 0.89 -0.0 232,293 - +0.1 232,328 - +0.4 232,328 - +0.3 232,364 - +0.8 232,367 + +1.9 232,386 - -0.0 232,469 + +0.0 232,472 + -1.2 232,479 + -1.6 232,479 + +1.0 232,480 - -1.9 232,483 + -0.6 232,484 - +1.0 232,496 - -0.0 232,505 + +0.6 232,506 - -0.0 232,506 - -0.1 232,506 - +0.2 232,517 - -0.3 232,580 + +0.4 232,580 + +0.7 232,690 - +0.5 232,754 + -0.1 232,754 + +0.1 232,755 - -0.9 232,773 - EX28DRAFT_3571 0.10 -3.5 232,773 - EX28DRAFT_3571 0.10 -0.1
Or see this region's nucleotide sequence