Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3567 and EX28DRAFT_3568 are separated by 409 nucleotides EX28DRAFT_3568 and EX28DRAFT_3569 overlap by 55 nucleotides EX28DRAFT_3569 and EX28DRAFT_3570 are separated by 38 nucleotides
EX28DRAFT_3567: EX28DRAFT_3567 - Uncharacterized conserved protein, at 229,257 to 230,033
_3567
EX28DRAFT_3568: EX28DRAFT_3568 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 230,443 to 231,180
_3568
EX28DRAFT_3569: EX28DRAFT_3569 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 231,126 to 231,812
_3569
EX28DRAFT_3570: EX28DRAFT_3570 - Uncharacterized conserved protein, at 231,851 to 232,309
_3570
Position (kb) 230
231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 229.527 kb on - strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.626 kb on - strand, within EX28DRAFT_3567 at 229.634 kb on + strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.692 kb on + strand, within EX28DRAFT_3567 at 229.693 kb on - strand, within EX28DRAFT_3567 at 229.745 kb on + strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.881 kb on - strand, within EX28DRAFT_3567 at 229.988 kb on + strand at 229.989 kb on - strand at 229.992 kb on + strand at 229.993 kb on - strand at 229.993 kb on - strand at 230.003 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.036 kb on - strand at 230.036 kb on - strand at 230.081 kb on + strand at 230.152 kb on + strand at 230.153 kb on - strand at 230.198 kb on - strand at 230.319 kb on + strand at 230.330 kb on + strand at 230.350 kb on + strand at 230.351 kb on - strand at 230.388 kb on + strand at 230.404 kb on - strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.466 kb on + strand at 230.467 kb on - strand at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.574 kb on - strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.742 kb on - strand, within EX28DRAFT_3568 at 230.818 kb on - strand, within EX28DRAFT_3568 at 230.924 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.937 kb on - strand, within EX28DRAFT_3568 at 230.940 kb on + strand, within EX28DRAFT_3568 at 230.941 kb on - strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 231.043 kb on - strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.056 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.109 kb on + strand at 231.152 kb on + strand at 231.152 kb on + strand at 231.153 kb on - strand at 231.257 kb on + strand, within EX28DRAFT_3569 at 231.258 kb on - strand, within EX28DRAFT_3569 at 231.263 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.392 kb on + strand, within EX28DRAFT_3569 at 231.425 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.666 kb on - strand, within EX28DRAFT_3569 at 231.684 kb on - strand, within EX28DRAFT_3569 at 231.725 kb on - strand, within EX28DRAFT_3569 at 231.749 kb on + strand at 231.749 kb on + strand at 231.749 kb on + strand at 231.750 kb on - strand at 231.794 kb on + strand at 231.795 kb on - strand at 231.808 kb on + strand at 231.808 kb on + strand at 231.910 kb on + strand, within EX28DRAFT_3570 at 231.910 kb on + strand, within EX28DRAFT_3570 at 232.016 kb on + strand, within EX28DRAFT_3570 at 232.017 kb on - strand, within EX28DRAFT_3570
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 229,527 - EX28DRAFT_3567 0.35 +0.3 229,570 + EX28DRAFT_3567 0.40 +0.5 229,570 + EX28DRAFT_3567 0.40 -0.0 229,571 - EX28DRAFT_3567 0.40 +0.8 229,571 - EX28DRAFT_3567 0.40 -0.5 229,571 - EX28DRAFT_3567 0.40 -0.1 229,571 - EX28DRAFT_3567 0.40 -0.6 229,571 - EX28DRAFT_3567 0.40 +0.5 229,571 - EX28DRAFT_3567 0.40 -0.3 229,626 - EX28DRAFT_3567 0.47 -0.7 229,634 + EX28DRAFT_3567 0.49 +0.1 229,660 - EX28DRAFT_3567 0.52 -0.2 229,660 - EX28DRAFT_3567 0.52 +0.1 229,692 + EX28DRAFT_3567 0.56 +0.8 229,693 - EX28DRAFT_3567 0.56 -0.1 229,745 + EX28DRAFT_3567 0.63 +0.0 229,746 - EX28DRAFT_3567 0.63 -0.4 229,746 - EX28DRAFT_3567 0.63 +0.2 229,746 - EX28DRAFT_3567 0.63 +0.3 229,881 - EX28DRAFT_3567 0.80 -0.0 229,988 + +0.5 229,989 - -0.7 229,992 + +0.1 229,993 - -0.8 229,993 - -0.2 230,003 + -0.6 230,035 + +0.2 230,035 + +0.1 230,035 + -0.4 230,035 + -0.2 230,035 + -0.1 230,036 - +0.7 230,036 - +0.1 230,081 + +0.2 230,152 + +1.0 230,153 - +0.2 230,198 - -0.2 230,319 + +0.1 230,330 + -1.1 230,350 + -0.7 230,351 - -0.7 230,388 + +0.2 230,404 - +0.4 230,442 + +0.0 230,442 + +0.5 230,442 + +0.3 230,442 + -0.2 230,442 + +0.7 230,443 - -0.3 230,443 - +0.5 230,443 - -0.8 230,443 - +0.5 230,466 + -0.1 230,467 - -0.9 230,551 + EX28DRAFT_3568 0.15 +0.8 230,551 + EX28DRAFT_3568 0.15 -0.3 230,574 - EX28DRAFT_3568 0.18 +0.5 230,741 + EX28DRAFT_3568 0.40 +0.6 230,741 + EX28DRAFT_3568 0.40 +0.4 230,742 - EX28DRAFT_3568 0.41 -0.8 230,818 - EX28DRAFT_3568 0.51 -0.5 230,924 + EX28DRAFT_3568 0.65 -2.9 230,936 + EX28DRAFT_3568 0.67 +0.9 230,936 + EX28DRAFT_3568 0.67 +0.6 230,937 - EX28DRAFT_3568 0.67 +1.1 230,940 + EX28DRAFT_3568 0.67 +0.7 230,941 - EX28DRAFT_3568 0.67 +0.8 230,988 + EX28DRAFT_3568 0.74 -0.6 230,988 + EX28DRAFT_3568 0.74 -0.5 231,043 - EX28DRAFT_3568 0.81 +0.7 231,055 + EX28DRAFT_3568 0.83 +0.1 231,055 + EX28DRAFT_3568 0.83 -0.6 231,056 - EX28DRAFT_3568 0.83 +0.6 231,073 - EX28DRAFT_3568 0.85 +0.5 231,073 - EX28DRAFT_3568 0.85 +0.5 231,109 + +0.4 231,152 + +0.9 231,152 + -0.1 231,153 - -0.2 231,257 + EX28DRAFT_3569 0.19 +0.6 231,258 - EX28DRAFT_3569 0.19 -2.9 231,263 + EX28DRAFT_3569 0.20 -0.5 231,303 + EX28DRAFT_3569 0.26 +1.1 231,303 + EX28DRAFT_3569 0.26 -0.3 231,304 - EX28DRAFT_3569 0.26 -0.1 231,304 - EX28DRAFT_3569 0.26 -1.7 231,304 - EX28DRAFT_3569 0.26 -0.1 231,304 - EX28DRAFT_3569 0.26 +0.2 231,392 + EX28DRAFT_3569 0.39 -0.4 231,425 - EX28DRAFT_3569 0.44 -1.3 231,543 - EX28DRAFT_3569 0.61 -0.1 231,543 - EX28DRAFT_3569 0.61 +0.0 231,543 - EX28DRAFT_3569 0.61 -1.6 231,609 + EX28DRAFT_3569 0.70 -0.6 231,609 + EX28DRAFT_3569 0.70 +1.1 231,609 + EX28DRAFT_3569 0.70 +0.1 231,611 + EX28DRAFT_3569 0.71 -0.4 231,611 + EX28DRAFT_3569 0.71 -0.1 231,612 - EX28DRAFT_3569 0.71 -4.3 231,612 - EX28DRAFT_3569 0.71 -0.3 231,612 - EX28DRAFT_3569 0.71 -1.1 231,612 - EX28DRAFT_3569 0.71 -3.5 231,612 - EX28DRAFT_3569 0.71 +0.1 231,665 + EX28DRAFT_3569 0.78 +0.5 231,665 + EX28DRAFT_3569 0.78 -0.1 231,665 + EX28DRAFT_3569 0.78 +0.3 231,666 - EX28DRAFT_3569 0.79 +0.4 231,684 - EX28DRAFT_3569 0.81 +0.3 231,725 - EX28DRAFT_3569 0.87 -0.7 231,749 + +0.2 231,749 + -0.5 231,749 + -0.1 231,750 - -2.9 231,794 + -1.5 231,795 - +0.6 231,808 + +0.2 231,808 + -1.8 231,910 + EX28DRAFT_3570 0.13 -0.2 231,910 + EX28DRAFT_3570 0.13 +0.5 232,016 + EX28DRAFT_3570 0.36 +0.1 232,017 - EX28DRAFT_3570 0.36 -0.2
Or see this region's nucleotide sequence