Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3475 and EX28DRAFT_3476 are separated by 19 nucleotides EX28DRAFT_3476 and EX28DRAFT_3477 are separated by 53 nucleotides EX28DRAFT_3477 and EX28DRAFT_3478 are separated by 12 nucleotides
EX28DRAFT_3475: EX28DRAFT_3475 - hypothetical protein, at 143,469 to 143,654
_3475
EX28DRAFT_3476: EX28DRAFT_3476 - hypothetical protein, at 143,674 to 143,841
_3476
EX28DRAFT_3477: EX28DRAFT_3477 - Helix-turn-helix domain, at 143,895 to 144,509
_3477
EX28DRAFT_3478: EX28DRAFT_3478 - hypothetical protein, at 144,522 to 144,803
_3478
Position (kb)
143
144 Strain fitness (log2 ratio)
-2
-1
0
1 at 142.714 kb on + strand at 142.714 kb on + strand at 142.715 kb on - strand at 142.777 kb on - strand at 142.786 kb on - strand at 142.786 kb on - strand at 142.832 kb on + strand at 142.832 kb on + strand at 142.832 kb on + strand at 142.833 kb on - strand at 142.870 kb on - strand at 142.873 kb on + strand at 142.873 kb on + strand at 142.873 kb on + strand at 142.873 kb on + strand at 142.874 kb on - strand at 142.874 kb on - strand at 142.874 kb on - strand at 142.914 kb on + strand at 142.915 kb on - strand at 142.924 kb on + strand at 142.924 kb on + strand at 142.924 kb on + strand at 142.925 kb on - strand at 142.925 kb on - strand at 142.925 kb on - strand at 142.932 kb on - strand at 142.934 kb on + strand at 142.934 kb on + strand at 142.943 kb on + strand at 142.944 kb on - strand at 142.944 kb on - strand at 142.990 kb on - strand at 142.990 kb on - strand at 142.995 kb on + strand at 142.996 kb on - strand at 143.006 kb on + strand at 143.014 kb on + strand at 143.054 kb on - strand at 143.057 kb on + strand at 143.058 kb on - strand at 143.060 kb on + strand at 143.073 kb on - strand at 143.073 kb on - strand at 143.089 kb on - strand at 143.089 kb on - strand at 143.172 kb on + strand at 143.209 kb on - strand at 143.233 kb on + strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.349 kb on - strand at 143.351 kb on - strand at 143.355 kb on + strand at 143.356 kb on - strand at 143.356 kb on - strand at 143.356 kb on - strand at 143.359 kb on - strand at 143.366 kb on - strand at 143.368 kb on - strand at 143.445 kb on - strand at 143.545 kb on + strand, within EX28DRAFT_3475 at 143.545 kb on + strand, within EX28DRAFT_3475 at 143.789 kb on - strand, within EX28DRAFT_3476 at 143.856 kb on + strand at 143.860 kb on - strand at 143.881 kb on + strand at 144.013 kb on - strand, within EX28DRAFT_3477 at 144.033 kb on - strand, within EX28DRAFT_3477 at 144.116 kb on + strand, within EX28DRAFT_3477 at 144.142 kb on + strand, within EX28DRAFT_3477 at 144.167 kb on + strand, within EX28DRAFT_3477 at 144.173 kb on + strand, within EX28DRAFT_3477 at 144.174 kb on - strand, within EX28DRAFT_3477 at 144.174 kb on - strand, within EX28DRAFT_3477 at 144.192 kb on + strand, within EX28DRAFT_3477 at 144.193 kb on - strand, within EX28DRAFT_3477 at 144.193 kb on - strand, within EX28DRAFT_3477 at 144.220 kb on + strand, within EX28DRAFT_3477 at 144.257 kb on - strand, within EX28DRAFT_3477 at 144.321 kb on - strand, within EX28DRAFT_3477 at 144.340 kb on - strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.475 kb on - strand at 144.539 kb on - strand at 144.572 kb on + strand, within EX28DRAFT_3478 at 144.614 kb on - strand, within EX28DRAFT_3478 at 144.668 kb on - strand, within EX28DRAFT_3478 at 144.704 kb on - strand, within EX28DRAFT_3478 at 144.751 kb on - strand, within EX28DRAFT_3478 at 144.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 142,714 + +0.3 142,714 + +0.8 142,715 - +0.3 142,777 - +0.2 142,786 - -1.0 142,786 - +0.1 142,832 + +0.2 142,832 + -0.2 142,832 + -0.2 142,833 - -0.5 142,870 - -0.6 142,873 + +0.2 142,873 + +1.2 142,873 + -1.2 142,873 + -0.0 142,874 - -0.1 142,874 - +0.7 142,874 - -0.1 142,914 + -0.5 142,915 - +0.4 142,924 + +0.2 142,924 + -0.2 142,924 + -0.1 142,925 - +0.1 142,925 - -0.9 142,925 - +0.3 142,932 - +0.7 142,934 + +0.5 142,934 + +0.1 142,943 + +0.2 142,944 - +0.4 142,944 - -0.0 142,990 - +0.3 142,990 - -0.7 142,995 + +0.1 142,996 - -1.7 143,006 + -0.1 143,014 + -0.0 143,054 - +0.5 143,057 + -2.5 143,058 - -1.6 143,060 + +0.5 143,073 - +0.4 143,073 - +0.4 143,089 - -0.3 143,089 - -2.1 143,172 + +0.3 143,209 - +0.3 143,233 + +0.4 143,234 - -0.2 143,234 - -0.2 143,234 - -0.4 143,349 - +0.5 143,351 - -0.7 143,355 + +0.2 143,356 - -0.2 143,356 - +0.0 143,356 - -0.8 143,359 - +0.3 143,366 - -0.1 143,368 - +0.4 143,445 - -0.1 143,545 + EX28DRAFT_3475 0.41 -0.1 143,545 + EX28DRAFT_3475 0.41 +0.1 143,789 - EX28DRAFT_3476 0.68 -0.9 143,856 + +0.5 143,860 - +0.2 143,881 + +0.5 144,013 - EX28DRAFT_3477 0.19 +0.1 144,033 - EX28DRAFT_3477 0.22 +0.3 144,116 + EX28DRAFT_3477 0.36 -1.4 144,142 + EX28DRAFT_3477 0.40 +0.9 144,167 + EX28DRAFT_3477 0.44 +0.1 144,173 + EX28DRAFT_3477 0.45 -0.6 144,174 - EX28DRAFT_3477 0.45 -1.7 144,174 - EX28DRAFT_3477 0.45 +0.7 144,192 + EX28DRAFT_3477 0.48 -0.3 144,193 - EX28DRAFT_3477 0.48 +0.5 144,193 - EX28DRAFT_3477 0.48 +0.3 144,220 + EX28DRAFT_3477 0.53 +0.2 144,257 - EX28DRAFT_3477 0.59 +0.6 144,321 - EX28DRAFT_3477 0.69 +0.8 144,340 - EX28DRAFT_3477 0.72 -0.6 144,421 + EX28DRAFT_3477 0.86 -0.1 144,421 + EX28DRAFT_3477 0.86 -0.6 144,475 - -0.0 144,539 - +0.1 144,572 + EX28DRAFT_3478 0.18 -0.5 144,614 - EX28DRAFT_3478 0.33 +0.5 144,668 - EX28DRAFT_3478 0.52 -0.8 144,704 - EX28DRAFT_3478 0.65 -0.5 144,751 - EX28DRAFT_3478 0.81 -0.4 144,840 + -0.5
Or see this region's nucleotide sequence