Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3450 and EX28DRAFT_3451 are separated by 119 nucleotides EX28DRAFT_3451 and EX28DRAFT_3452 are separated by 10 nucleotides
EX28DRAFT_3450: EX28DRAFT_3450 - ornithine carbamoyltransferase, at 122,124 to 123,128
_3450
EX28DRAFT_3451: EX28DRAFT_3451 - carbamate kinase, at 123,248 to 124,159
_3451
EX28DRAFT_3452: EX28DRAFT_3452 - arginine deiminase (EC 3.5.3.6), at 124,170 to 125,390
_3452
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1 at 122.366 kb on - strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.644 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.868 kb on - strand, within EX28DRAFT_3450 at 122.899 kb on + strand, within EX28DRAFT_3450 at 123.082 kb on + strand at 123.082 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.894 kb on + strand, within EX28DRAFT_3451 at 124.731 kb on + strand, within EX28DRAFT_3452 at 124.746 kb on + strand, within EX28DRAFT_3452 at 124.769 kb on + strand, within EX28DRAFT_3452 at 124.929 kb on + strand, within EX28DRAFT_3452 at 124.988 kb on + strand, within EX28DRAFT_3452
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 122,366 - EX28DRAFT_3450 0.24 -0.5 122,417 + EX28DRAFT_3450 0.29 +0.0 122,417 + EX28DRAFT_3450 0.29 -0.0 122,644 + EX28DRAFT_3450 0.52 -0.7 122,824 + EX28DRAFT_3450 0.70 -0.1 122,824 + EX28DRAFT_3450 0.70 -0.0 122,824 + EX28DRAFT_3450 0.70 -0.0 122,824 + EX28DRAFT_3450 0.70 -0.2 122,824 + EX28DRAFT_3450 0.70 +0.3 122,825 - EX28DRAFT_3450 0.70 +0.7 122,825 - EX28DRAFT_3450 0.70 +0.8 122,825 - EX28DRAFT_3450 0.70 +0.5 122,868 - EX28DRAFT_3450 0.74 -1.3 122,899 + EX28DRAFT_3450 0.77 -0.1 123,082 + +0.3 123,082 + +0.3 123,200 + -1.2 123,200 + -0.0 123,200 + -0.1 123,200 + +0.3 123,200 + -0.1 123,200 + -0.1 123,702 + EX28DRAFT_3451 0.50 -0.7 123,702 + EX28DRAFT_3451 0.50 -0.4 123,702 + EX28DRAFT_3451 0.50 -1.1 123,768 + EX28DRAFT_3451 0.57 -0.4 123,768 + EX28DRAFT_3451 0.57 -0.0 123,783 + EX28DRAFT_3451 0.59 -0.7 123,783 + EX28DRAFT_3451 0.59 -0.8 123,783 + EX28DRAFT_3451 0.59 -0.1 123,894 + EX28DRAFT_3451 0.71 +0.0 124,731 + EX28DRAFT_3452 0.46 -1.2 124,746 + EX28DRAFT_3452 0.47 -0.5 124,769 + EX28DRAFT_3452 0.49 -1.0 124,929 + EX28DRAFT_3452 0.62 +0.6 124,988 + EX28DRAFT_3452 0.67 -0.3
Or see this region's nucleotide sequence