Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3185 and EX28DRAFT_3186 are separated by 251 nucleotides EX28DRAFT_3186 and EX28DRAFT_3187 are separated by 20 nucleotides EX28DRAFT_3187 and EX28DRAFT_3188 are separated by 10 nucleotides
EX28DRAFT_3185: EX28DRAFT_3185 - transcriptional regulator, DeoR family, at 486,059 to 486,862
_3185
EX28DRAFT_3186: EX28DRAFT_3186 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit, at 487,114 to 488,409
_3186
EX28DRAFT_3187: EX28DRAFT_3187 - PTS system, mannose/fructose/sorbose family, IIB component, at 488,430 to 488,903
_3187
EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693
_3188
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1 at 486.134 kb on - strand at 486.215 kb on - strand, within EX28DRAFT_3185 at 486.508 kb on - strand, within EX28DRAFT_3185 at 486.596 kb on - strand, within EX28DRAFT_3185 at 486.947 kb on - strand at 486.947 kb on - strand at 486.951 kb on - strand at 487.040 kb on - strand at 487.092 kb on - strand at 487.147 kb on - strand at 487.171 kb on + strand at 487.171 kb on + strand at 487.171 kb on + strand at 487.621 kb on + strand, within EX28DRAFT_3186 at 487.773 kb on + strand, within EX28DRAFT_3186 at 487.873 kb on + strand, within EX28DRAFT_3186 at 488.004 kb on - strand, within EX28DRAFT_3186 at 488.101 kb on + strand, within EX28DRAFT_3186 at 488.102 kb on - strand, within EX28DRAFT_3186 at 488.117 kb on - strand, within EX28DRAFT_3186 at 488.162 kb on - strand, within EX28DRAFT_3186 at 488.182 kb on + strand, within EX28DRAFT_3186 at 488.272 kb on + strand, within EX28DRAFT_3186 at 488.293 kb on - strand at 488.357 kb on + strand at 488.357 kb on + strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.488 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.748 kb on - strand, within EX28DRAFT_3187 at 489.080 kb on + strand, within EX28DRAFT_3188 at 489.243 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.335 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.392 kb on - strand, within EX28DRAFT_3188
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 486,134 - -0.2 486,215 - EX28DRAFT_3185 0.19 -0.1 486,508 - EX28DRAFT_3185 0.56 -0.0 486,596 - EX28DRAFT_3185 0.67 -1.6 486,947 - -0.5 486,947 - -1.0 486,951 - +0.2 487,040 - -0.2 487,092 - +0.5 487,147 - -1.0 487,171 + -0.6 487,171 + +0.1 487,171 + +0.3 487,621 + EX28DRAFT_3186 0.39 -0.0 487,773 + EX28DRAFT_3186 0.51 +0.5 487,873 + EX28DRAFT_3186 0.59 +0.2 488,004 - EX28DRAFT_3186 0.69 +0.3 488,101 + EX28DRAFT_3186 0.76 +1.2 488,102 - EX28DRAFT_3186 0.76 -0.1 488,117 - EX28DRAFT_3186 0.77 +0.4 488,162 - EX28DRAFT_3186 0.81 -0.9 488,182 + EX28DRAFT_3186 0.82 +0.5 488,272 + EX28DRAFT_3186 0.89 -0.6 488,293 - +0.2 488,357 + -0.2 488,357 + -2.0 488,358 - +0.1 488,358 - +0.9 488,358 - +0.3 488,488 + EX28DRAFT_3187 0.12 +0.0 488,747 + EX28DRAFT_3187 0.67 +0.6 488,747 + EX28DRAFT_3187 0.67 +0.1 488,748 - EX28DRAFT_3187 0.67 -0.7 489,080 + EX28DRAFT_3188 0.21 +0.1 489,243 + EX28DRAFT_3188 0.42 +0.9 489,309 + EX28DRAFT_3188 0.51 +0.5 489,309 + EX28DRAFT_3188 0.51 -0.0 489,334 + EX28DRAFT_3188 0.54 +0.3 489,334 + EX28DRAFT_3188 0.54 -0.5 489,335 - EX28DRAFT_3188 0.54 -0.2 489,365 - EX28DRAFT_3188 0.58 -0.3 489,365 - EX28DRAFT_3188 0.58 +0.1 489,392 - EX28DRAFT_3188 0.61 +0.1
Or see this region's nucleotide sequence