Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3162

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3161 and EX28DRAFT_3162 are separated by 115 nucleotidesEX28DRAFT_3162 and EX28DRAFT_3163 are separated by 344 nucleotides EX28DRAFT_3161: EX28DRAFT_3161 - D-galactonate transporter, at 464,638 to 465,936 _3161 EX28DRAFT_3162: EX28DRAFT_3162 - Transcriptional regulators, at 466,052 to 466,828 _3162 EX28DRAFT_3163: EX28DRAFT_3163 - Uncharacterized membrane-associated protein, at 467,173 to 467,835 _3163 Position (kb) 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 465.084 kb on - strand, within EX28DRAFT_3161at 465.238 kb on + strand, within EX28DRAFT_3161at 465.238 kb on + strand, within EX28DRAFT_3161at 465.239 kb on - strand, within EX28DRAFT_3161at 465.477 kb on + strand, within EX28DRAFT_3161at 465.613 kb on + strand, within EX28DRAFT_3161at 465.613 kb on + strand, within EX28DRAFT_3161at 465.614 kb on - strand, within EX28DRAFT_3161at 465.759 kb on + strand, within EX28DRAFT_3161at 465.859 kb on - strandat 465.954 kb on + strandat 466.077 kb on + strandat 466.079 kb on + strandat 466.079 kb on + strandat 466.210 kb on + strand, within EX28DRAFT_3162at 466.210 kb on + strand, within EX28DRAFT_3162at 466.326 kb on - strand, within EX28DRAFT_3162at 466.373 kb on - strand, within EX28DRAFT_3162at 466.663 kb on + strand, within EX28DRAFT_3162at 466.827 kb on - strandat 466.890 kb on + strandat 466.890 kb on + strandat 466.891 kb on - strandat 466.891 kb on - strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.895 kb on - strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.910 kb on - strandat 466.910 kb on - strandat 467.046 kb on + strandat 467.192 kb on + strandat 467.192 kb on + strandat 467.193 kb on - strandat 467.193 kb on - strandat 467.257 kb on + strand, within EX28DRAFT_3163at 467.257 kb on + strand, within EX28DRAFT_3163at 467.258 kb on - strand, within EX28DRAFT_3163at 467.258 kb on - strand, within EX28DRAFT_3163at 467.271 kb on + strand, within EX28DRAFT_3163at 467.272 kb on - strand, within EX28DRAFT_3163at 467.390 kb on + strand, within EX28DRAFT_3163at 467.391 kb on - strand, within EX28DRAFT_3163at 467.391 kb on - strand, within EX28DRAFT_3163at 467.431 kb on + strand, within EX28DRAFT_3163at 467.431 kb on + strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.432 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.661 kb on - strand, within EX28DRAFT_3163at 467.690 kb on - strand, within EX28DRAFT_3163at 467.722 kb on + strand, within EX28DRAFT_3163at 467.722 kb on + strand, within EX28DRAFT_3163at 467.723 kb on - strand, within EX28DRAFT_3163

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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465,084 - EX28DRAFT_3161 0.34 -0.7
465,238 + EX28DRAFT_3161 0.46 -0.2
465,238 + EX28DRAFT_3161 0.46 -0.2
465,239 - EX28DRAFT_3161 0.46 +0.3
465,477 + EX28DRAFT_3161 0.65 -0.4
465,613 + EX28DRAFT_3161 0.75 -0.5
465,613 + EX28DRAFT_3161 0.75 +0.2
465,614 - EX28DRAFT_3161 0.75 +0.2
465,759 + EX28DRAFT_3161 0.86 +1.7
465,859 - +0.0
465,954 + +0.2
466,077 + -1.3
466,079 + -0.3
466,079 + +0.1
466,210 + EX28DRAFT_3162 0.20 +0.6
466,210 + EX28DRAFT_3162 0.20 +0.5
466,326 - EX28DRAFT_3162 0.35 +0.4
466,373 - EX28DRAFT_3162 0.41 -0.0
466,663 + EX28DRAFT_3162 0.79 +0.1
466,827 - -0.2
466,890 + +0.2
466,890 + -0.8
466,891 - +0.6
466,891 - -1.9
466,892 + -0.9
466,892 + -0.3
466,892 + +1.1
466,893 - +0.5
466,893 - +0.3
466,893 - +0.5
466,894 + +0.4
466,894 + +0.4
466,894 + +0.0
466,895 - -0.7
466,909 + +0.0
466,909 + -0.0
466,909 + -0.5
466,910 - +0.3
466,910 - -0.5
467,046 + +0.4
467,192 + +0.1
467,192 + +0.6
467,193 - -2.5
467,193 - -0.0
467,257 + EX28DRAFT_3163 0.13 +1.0
467,257 + EX28DRAFT_3163 0.13 +1.3
467,258 - EX28DRAFT_3163 0.13 +0.7
467,258 - EX28DRAFT_3163 0.13 +0.3
467,271 + EX28DRAFT_3163 0.15 +0.6
467,272 - EX28DRAFT_3163 0.15 -1.7
467,390 + EX28DRAFT_3163 0.33 +0.6
467,391 - EX28DRAFT_3163 0.33 -0.0
467,391 - EX28DRAFT_3163 0.33 +1.2
467,431 + EX28DRAFT_3163 0.39 +0.4
467,431 + EX28DRAFT_3163 0.39 +0.4
467,432 - EX28DRAFT_3163 0.39 +0.1
467,432 - EX28DRAFT_3163 0.39 +0.7
467,432 - EX28DRAFT_3163 0.39 +0.3
467,432 - EX28DRAFT_3163 0.39 +0.4
467,432 - EX28DRAFT_3163 0.39 +1.9
467,432 - EX28DRAFT_3163 0.39 +0.0
467,661 - EX28DRAFT_3163 0.74 +1.1
467,661 - EX28DRAFT_3163 0.74 +0.5
467,661 - EX28DRAFT_3163 0.74 +0.2
467,690 - EX28DRAFT_3163 0.78 +0.5
467,722 + EX28DRAFT_3163 0.83 +0.5
467,722 + EX28DRAFT_3163 0.83 +2.5
467,723 - EX28DRAFT_3163 0.83 +0.9

Or see this region's nucleotide sequence