Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3141

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3140 and EX28DRAFT_3141 are separated by 38 nucleotidesEX28DRAFT_3141 and EX28DRAFT_3142 are separated by 42 nucleotidesEX28DRAFT_3142 and EX28DRAFT_3143 are separated by 12 nucleotides EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541 _3140 EX28DRAFT_3141: EX28DRAFT_3141 - transcriptional regulator, XRE family with cupin sensor, at 442,580 to 443,182 _3141 EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911 _3142 EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772 _3143 Position (kb) 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1at 441.589 kb on - strand, within EX28DRAFT_3140at 441.589 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.708 kb on - strand, within EX28DRAFT_3140at 441.761 kb on + strand, within EX28DRAFT_3140at 441.840 kb on - strand, within EX28DRAFT_3140at 441.918 kb on + strand, within EX28DRAFT_3140at 442.279 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.522 kb on + strandat 442.522 kb on + strandat 442.523 kb on - strandat 442.610 kb on - strandat 442.722 kb on - strand, within EX28DRAFT_3141at 442.814 kb on + strand, within EX28DRAFT_3141at 442.815 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.224 kb on + strandat 443.224 kb on + strandat 443.224 kb on + strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.530 kb on + strand, within EX28DRAFT_3142at 443.530 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.641 kb on + strand, within EX28DRAFT_3142at 443.693 kb on - strand, within EX28DRAFT_3142at 443.779 kb on + strand, within EX28DRAFT_3142at 443.779 kb on + strand, within EX28DRAFT_3142at 443.780 kb on - strand, within EX28DRAFT_3142at 443.789 kb on - strand, within EX28DRAFT_3142at 443.909 kb on + strandat 443.909 kb on + strandat 444.062 kb on + strand, within EX28DRAFT_3143at 444.063 kb on - strand, within EX28DRAFT_3143at 444.068 kb on + strand, within EX28DRAFT_3143

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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441,589 - EX28DRAFT_3140 0.32 +0.3
441,589 - EX28DRAFT_3140 0.32 +0.3
441,600 - EX28DRAFT_3140 0.33 +0.3
441,600 - EX28DRAFT_3140 0.33 +0.3
441,708 - EX28DRAFT_3140 0.41 -0.6
441,761 + EX28DRAFT_3140 0.44 -0.2
441,840 - EX28DRAFT_3140 0.50 -0.7
441,918 + EX28DRAFT_3140 0.56 +0.0
442,279 + EX28DRAFT_3140 0.81 +0.9
442,367 + EX28DRAFT_3140 0.88 -0.5
442,367 + EX28DRAFT_3140 0.88 +1.1
442,522 + +0.2
442,522 + +0.1
442,523 - +0.5
442,610 - +0.2
442,722 - EX28DRAFT_3141 0.24 -0.3
442,814 + EX28DRAFT_3141 0.39 -0.7
442,815 - EX28DRAFT_3141 0.39 +0.5
443,042 - EX28DRAFT_3141 0.77 -0.6
443,042 - EX28DRAFT_3141 0.77 +0.1
443,224 + +0.5
443,224 + -1.9
443,224 + +0.7
443,225 - +0.6
443,225 - +0.7
443,225 - -0.4
443,247 + -1.5
443,247 + -2.9
443,247 + +0.8
443,530 + EX28DRAFT_3142 0.44 +0.2
443,530 + EX28DRAFT_3142 0.44 -0.1
443,534 + EX28DRAFT_3142 0.45 -0.1
443,534 + EX28DRAFT_3142 0.45 +0.1
443,534 + EX28DRAFT_3142 0.45 -0.4
443,534 + EX28DRAFT_3142 0.45 +0.2
443,534 + EX28DRAFT_3142 0.45 -0.3
443,534 + EX28DRAFT_3142 0.45 +0.1
443,534 + EX28DRAFT_3142 0.45 +0.0
443,534 + EX28DRAFT_3142 0.45 +0.3
443,535 - EX28DRAFT_3142 0.45 +0.3
443,535 - EX28DRAFT_3142 0.45 +0.6
443,535 - EX28DRAFT_3142 0.45 +0.9
443,535 - EX28DRAFT_3142 0.45 -0.0
443,535 - EX28DRAFT_3142 0.45 -1.0
443,641 + EX28DRAFT_3142 0.61 -0.3
443,693 - EX28DRAFT_3142 0.68 +0.8
443,779 + EX28DRAFT_3142 0.81 -0.3
443,779 + EX28DRAFT_3142 0.81 -0.6
443,780 - EX28DRAFT_3142 0.81 -1.5
443,789 - EX28DRAFT_3142 0.82 -0.1
443,909 + +0.3
443,909 + -3.6
444,062 + EX28DRAFT_3143 0.16 -1.7
444,063 - EX28DRAFT_3143 0.16 +0.2
444,068 + EX28DRAFT_3143 0.17 +0.4

Or see this region's nucleotide sequence