Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3039

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3038 and EX28DRAFT_3039 are separated by 231 nucleotidesEX28DRAFT_3039 and EX28DRAFT_3040 are separated by 93 nucleotidesEX28DRAFT_3040 and EX28DRAFT_3041 are separated by 81 nucleotides EX28DRAFT_3038: EX28DRAFT_3038 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 346,657 to 348,204 _3038 EX28DRAFT_3039: EX28DRAFT_3039 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 348,436 to 349,476 _3039 EX28DRAFT_3040: EX28DRAFT_3040 - TIGR00645 family protein, at 349,570 to 350,058 _3040 EX28DRAFT_3041: EX28DRAFT_3041 - hypothetical protein, at 350,140 to 350,643 _3041 Position (kb) 348 349 350Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 347.442 kb on + strand, within EX28DRAFT_3038at 348.058 kb on - strandat 348.116 kb on + strandat 348.117 kb on - strandat 348.140 kb on - strandat 348.140 kb on - strandat 348.140 kb on - strandat 348.198 kb on + strandat 348.198 kb on + strandat 348.199 kb on - strandat 348.199 kb on - strandat 348.199 kb on - strandat 348.204 kb on + strandat 348.204 kb on + strandat 348.205 kb on - strandat 348.246 kb on + strandat 348.249 kb on + strandat 348.249 kb on + strandat 348.280 kb on + strandat 348.281 kb on - strandat 348.302 kb on + strandat 348.307 kb on - strandat 348.345 kb on + strandat 348.357 kb on + strandat 348.365 kb on + strandat 348.365 kb on + strandat 348.365 kb on + strandat 348.366 kb on - strandat 348.380 kb on + strandat 348.471 kb on + strandat 348.472 kb on - strandat 348.479 kb on - strandat 348.479 kb on - strandat 348.538 kb on - strandat 348.627 kb on + strand, within EX28DRAFT_3039at 348.632 kb on - strand, within EX28DRAFT_3039at 348.714 kb on + strand, within EX28DRAFT_3039at 348.774 kb on + strand, within EX28DRAFT_3039at 348.779 kb on - strand, within EX28DRAFT_3039at 348.826 kb on + strand, within EX28DRAFT_3039at 348.827 kb on - strand, within EX28DRAFT_3039at 348.834 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 349.022 kb on - strand, within EX28DRAFT_3039at 349.022 kb on - strand, within EX28DRAFT_3039at 349.135 kb on + strand, within EX28DRAFT_3039at 349.183 kb on - strand, within EX28DRAFT_3039at 349.474 kb on + strandat 349.474 kb on + strandat 349.525 kb on + strandat 349.529 kb on + strandat 349.529 kb on + strandat 349.529 kb on + strandat 349.530 kb on - strandat 349.578 kb on + strandat 349.579 kb on - strandat 349.587 kb on + strandat 349.588 kb on - strandat 349.683 kb on + strand, within EX28DRAFT_3040at 349.776 kb on + strand, within EX28DRAFT_3040at 350.000 kb on + strand, within EX28DRAFT_3040at 350.030 kb on + strandat 350.030 kb on + strandat 350.031 kb on - strandat 350.031 kb on - strandat 350.059 kb on - strandat 350.092 kb on + strandat 350.092 kb on + strandat 350.093 kb on - strandat 350.094 kb on + strandat 350.095 kb on - strandat 350.095 kb on - strandat 350.095 kb on - strandat 350.132 kb on + strandat 350.132 kb on + strandat 350.174 kb on + strandat 350.174 kb on + strandat 350.406 kb on + strand, within EX28DRAFT_3041at 350.431 kb on - strand, within EX28DRAFT_3041

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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347,442 + EX28DRAFT_3038 0.51 -0.8
348,058 - +0.4
348,116 + -0.1
348,117 - +0.1
348,140 - +1.4
348,140 - +0.0
348,140 - -0.4
348,198 + -1.0
348,198 + +0.2
348,199 - +0.5
348,199 - -0.8
348,199 - -0.0
348,204 + -0.5
348,204 + -1.0
348,205 - -1.2
348,246 + -2.4
348,249 + -0.2
348,249 + -0.2
348,280 + -0.5
348,281 - +0.0
348,302 + +1.0
348,307 - +0.5
348,345 + +0.1
348,357 + -0.2
348,365 + -0.9
348,365 + -1.0
348,365 + -0.3
348,366 - -0.3
348,380 + +1.1
348,471 + -0.4
348,472 - +0.5
348,479 - +1.5
348,479 - +0.5
348,538 - -0.0
348,627 + EX28DRAFT_3039 0.18 +0.3
348,632 - EX28DRAFT_3039 0.19 +0.3
348,714 + EX28DRAFT_3039 0.27 +0.2
348,774 + EX28DRAFT_3039 0.32 +0.1
348,779 - EX28DRAFT_3039 0.33 -0.3
348,826 + EX28DRAFT_3039 0.37 -3.5
348,827 - EX28DRAFT_3039 0.38 +0.3
348,834 + EX28DRAFT_3039 0.38 -0.3
348,925 + EX28DRAFT_3039 0.47 -0.1
348,925 + EX28DRAFT_3039 0.47 -0.1
348,925 + EX28DRAFT_3039 0.47 +0.1
349,022 - EX28DRAFT_3039 0.56 -1.7
349,022 - EX28DRAFT_3039 0.56 -0.5
349,135 + EX28DRAFT_3039 0.67 -1.1
349,183 - EX28DRAFT_3039 0.72 -1.1
349,474 + -0.5
349,474 + -0.4
349,525 + +0.6
349,529 + -0.6
349,529 + -0.1
349,529 + -0.6
349,530 - -0.5
349,578 + -0.6
349,579 - -0.7
349,587 + +0.3
349,588 - +0.2
349,683 + EX28DRAFT_3040 0.23 +0.2
349,776 + EX28DRAFT_3040 0.42 -1.2
350,000 + EX28DRAFT_3040 0.88 +0.2
350,030 + +1.4
350,030 + -0.0
350,031 - +0.5
350,031 - -0.3
350,059 - -0.8
350,092 + -1.2
350,092 + +0.5
350,093 - +0.1
350,094 + +0.2
350,095 - -0.6
350,095 - -0.1
350,095 - -0.7
350,132 + +0.0
350,132 + -0.9
350,174 + -0.2
350,174 + -4.1
350,406 + EX28DRAFT_3041 0.53 +1.0
350,431 - EX28DRAFT_3041 0.58 -0.4

Or see this region's nucleotide sequence