Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2851

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2850 and EX28DRAFT_2851 are separated by 71 nucleotidesEX28DRAFT_2851 and EX28DRAFT_2852 are separated by 15 nucleotides EX28DRAFT_2850: EX28DRAFT_2850 - Predicted aminopeptidases, at 151,093 to 152,136 _2850 EX28DRAFT_2851: EX28DRAFT_2851 - phosphoadenosine phosphosulfate reductase, thioredoxin dependent, at 152,208 to 152,942 _2851 EX28DRAFT_2852: EX28DRAFT_2852 - sulfite reductase (NADPH) hemoprotein, beta-component, at 152,958 to 154,670 _2852 Position (kb) 152 153Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 151.209 kb on + strand, within EX28DRAFT_2850at 151.210 kb on - strand, within EX28DRAFT_2850at 151.340 kb on - strand, within EX28DRAFT_2850at 151.340 kb on - strand, within EX28DRAFT_2850at 151.341 kb on + strand, within EX28DRAFT_2850at 151.342 kb on - strand, within EX28DRAFT_2850at 151.342 kb on - strand, within EX28DRAFT_2850at 151.371 kb on + strand, within EX28DRAFT_2850at 151.372 kb on - strand, within EX28DRAFT_2850at 151.386 kb on + strand, within EX28DRAFT_2850at 151.431 kb on + strand, within EX28DRAFT_2850at 151.431 kb on + strand, within EX28DRAFT_2850at 151.450 kb on - strand, within EX28DRAFT_2850at 151.454 kb on - strand, within EX28DRAFT_2850at 151.729 kb on + strand, within EX28DRAFT_2850at 151.730 kb on - strand, within EX28DRAFT_2850at 151.915 kb on + strand, within EX28DRAFT_2850at 151.915 kb on + strand, within EX28DRAFT_2850at 151.916 kb on - strand, within EX28DRAFT_2850at 151.916 kb on - strand, within EX28DRAFT_2850at 152.143 kb on + strandat 152.144 kb on - strandat 152.163 kb on - strandat 152.163 kb on - strandat 152.365 kb on + strand, within EX28DRAFT_2851at 152.632 kb on + strand, within EX28DRAFT_2851at 152.676 kb on - strand, within EX28DRAFT_2851at 152.778 kb on - strand, within EX28DRAFT_2851at 152.800 kb on + strand, within EX28DRAFT_2851at 152.942 kb on + strandat 152.942 kb on + strandat 152.942 kb on + strandat 152.942 kb on + strandat 152.943 kb on - strandat 152.943 kb on - strandat 152.943 kb on - strandat 152.943 kb on - strandat 152.946 kb on + strandat 152.947 kb on - strandat 152.947 kb on - strandat 152.947 kb on - strandat 152.947 kb on - strandat 153.018 kb on - strandat 153.123 kb on - strandat 153.123 kb on - strandat 153.143 kb on + strand, within EX28DRAFT_2852at 153.252 kb on - strand, within EX28DRAFT_2852at 153.252 kb on - strand, within EX28DRAFT_2852at 153.257 kb on + strand, within EX28DRAFT_2852at 153.258 kb on - strand, within EX28DRAFT_2852at 153.258 kb on - strand, within EX28DRAFT_2852at 153.258 kb on - strand, within EX28DRAFT_2852at 153.258 kb on - strand, within EX28DRAFT_2852at 153.258 kb on - strand, within EX28DRAFT_2852at 153.513 kb on - strand, within EX28DRAFT_2852at 153.572 kb on + strand, within EX28DRAFT_2852at 153.745 kb on + strand, within EX28DRAFT_2852at 153.746 kb on - strand, within EX28DRAFT_2852at 153.746 kb on - strand, within EX28DRAFT_2852at 153.746 kb on - strand, within EX28DRAFT_2852at 153.746 kb on - strand, within EX28DRAFT_2852at 153.746 kb on - strand, within EX28DRAFT_2852at 153.872 kb on - strand, within EX28DRAFT_2852at 153.923 kb on + strand, within EX28DRAFT_2852

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
151,209 + EX28DRAFT_2850 0.11 +0.4
151,210 - EX28DRAFT_2850 0.11 -0.0
151,340 - EX28DRAFT_2850 0.24 -2.2
151,340 - EX28DRAFT_2850 0.24 +0.3
151,341 + EX28DRAFT_2850 0.24 +0.2
151,342 - EX28DRAFT_2850 0.24 -0.3
151,342 - EX28DRAFT_2850 0.24 +0.4
151,371 + EX28DRAFT_2850 0.27 +0.4
151,372 - EX28DRAFT_2850 0.27 +0.5
151,386 + EX28DRAFT_2850 0.28 +1.3
151,431 + EX28DRAFT_2850 0.32 +1.1
151,431 + EX28DRAFT_2850 0.32 +0.6
151,450 - EX28DRAFT_2850 0.34 -0.8
151,454 - EX28DRAFT_2850 0.35 +0.6
151,729 + EX28DRAFT_2850 0.61 +0.8
151,730 - EX28DRAFT_2850 0.61 -0.1
151,915 + EX28DRAFT_2850 0.79 +0.3
151,915 + EX28DRAFT_2850 0.79 +0.5
151,916 - EX28DRAFT_2850 0.79 +0.6
151,916 - EX28DRAFT_2850 0.79 +0.1
152,143 + -0.7
152,144 - -0.7
152,163 - -0.1
152,163 - -0.7
152,365 + EX28DRAFT_2851 0.21 -2.2
152,632 + EX28DRAFT_2851 0.58 -1.7
152,676 - EX28DRAFT_2851 0.64 -4.5
152,778 - EX28DRAFT_2851 0.78 -1.8
152,800 + EX28DRAFT_2851 0.81 -1.5
152,942 + -3.5
152,942 + -5.1
152,942 + -3.9
152,942 + -1.7
152,943 - -2.6
152,943 - +0.9
152,943 - -3.8
152,943 - -2.4
152,946 + -2.7
152,947 - -0.7
152,947 - -2.2
152,947 - -1.8
152,947 - -1.4
153,018 - -1.6
153,123 - -2.7
153,123 - -2.2
153,143 + EX28DRAFT_2852 0.11 -1.2
153,252 - EX28DRAFT_2852 0.17 -1.8
153,252 - EX28DRAFT_2852 0.17 +0.5
153,257 + EX28DRAFT_2852 0.17 -1.6
153,258 - EX28DRAFT_2852 0.18 -1.9
153,258 - EX28DRAFT_2852 0.18 -3.4
153,258 - EX28DRAFT_2852 0.18 -1.0
153,258 - EX28DRAFT_2852 0.18 -3.0
153,258 - EX28DRAFT_2852 0.18 -1.1
153,513 - EX28DRAFT_2852 0.32 -3.7
153,572 + EX28DRAFT_2852 0.36 +0.3
153,745 + EX28DRAFT_2852 0.46 -2.0
153,746 - EX28DRAFT_2852 0.46 +0.1
153,746 - EX28DRAFT_2852 0.46 -4.4
153,746 - EX28DRAFT_2852 0.46 -1.5
153,746 - EX28DRAFT_2852 0.46 -0.4
153,746 - EX28DRAFT_2852 0.46 -1.5
153,872 - EX28DRAFT_2852 0.53 +1.3
153,923 + EX28DRAFT_2852 0.56 -2.5

Or see this region's nucleotide sequence