Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotides EX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotides EX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotides
EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744
_2826
EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094
_2827
EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500
_2828
EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175
_2829
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.826 kb on + strand, within EX28DRAFT_2826 at 130.056 kb on + strand, within EX28DRAFT_2826 at 130.057 kb on - strand, within EX28DRAFT_2826 at 130.082 kb on + strand, within EX28DRAFT_2826 at 130.175 kb on - strand, within EX28DRAFT_2826 at 130.185 kb on - strand, within EX28DRAFT_2826 at 130.205 kb on + strand, within EX28DRAFT_2826 at 130.311 kb on + strand, within EX28DRAFT_2826 at 130.311 kb on + strand, within EX28DRAFT_2826 at 130.312 kb on - strand, within EX28DRAFT_2826 at 130.354 kb on - strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.521 kb on + strand, within EX28DRAFT_2826 at 130.665 kb on - strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.845 kb on + strand, within EX28DRAFT_2827 at 130.846 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 131.036 kb on + strand, within EX28DRAFT_2827 at 131.037 kb on - strand, within EX28DRAFT_2827 at 131.223 kb on + strand at 131.269 kb on + strand at 131.298 kb on - strand, within EX28DRAFT_2828 at 131.319 kb on - strand, within EX28DRAFT_2828 at 131.392 kb on - strand, within EX28DRAFT_2828 at 131.423 kb on - strand, within EX28DRAFT_2828 at 131.478 kb on + strand at 131.546 kb on - strand at 131.546 kb on - strand at 131.607 kb on + strand at 131.607 kb on + strand at 131.608 kb on - strand at 131.663 kb on - strand at 131.729 kb on + strand at 131.729 kb on + strand at 131.730 kb on - strand at 131.730 kb on - strand at 131.730 kb on - strand at 131.745 kb on + strand at 131.823 kb on + strand at 131.824 kb on - strand at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 129,826 + EX28DRAFT_2826 0.25 -0.6 130,056 + EX28DRAFT_2826 0.44 +0.8 130,057 - EX28DRAFT_2826 0.44 +1.1 130,082 + EX28DRAFT_2826 0.46 +0.1 130,175 - EX28DRAFT_2826 0.53 +0.0 130,185 - EX28DRAFT_2826 0.54 -1.2 130,205 + EX28DRAFT_2826 0.56 +0.2 130,311 + EX28DRAFT_2826 0.64 -0.1 130,311 + EX28DRAFT_2826 0.64 -0.3 130,312 - EX28DRAFT_2826 0.65 -0.2 130,354 - EX28DRAFT_2826 0.68 -0.4 130,521 + EX28DRAFT_2826 0.82 +2.1 130,521 + EX28DRAFT_2826 0.82 -0.8 130,521 + EX28DRAFT_2826 0.82 -1.1 130,665 - +0.1 130,766 + +0.2 130,766 + -1.0 130,845 + EX28DRAFT_2827 0.28 +0.9 130,846 - EX28DRAFT_2827 0.28 +0.8 130,957 - EX28DRAFT_2827 0.60 -0.1 130,957 - EX28DRAFT_2827 0.60 +0.2 131,036 + EX28DRAFT_2827 0.83 +0.2 131,037 - EX28DRAFT_2827 0.83 -0.6 131,223 + +0.2 131,269 + -0.7 131,298 - EX28DRAFT_2828 0.12 -0.3 131,319 - EX28DRAFT_2828 0.21 +0.5 131,392 - EX28DRAFT_2828 0.53 +0.0 131,423 - EX28DRAFT_2828 0.66 -2.3 131,478 + -0.3 131,546 - -0.3 131,546 - -0.2 131,607 + -0.2 131,607 + +0.2 131,608 - -0.6 131,663 - +0.1 131,729 + +0.3 131,729 + -2.1 131,730 - +0.2 131,730 - -0.6 131,730 - -0.7 131,745 + +0.9 131,823 + -0.0 131,824 - -0.5 132,063 + EX28DRAFT_2829 0.18 +0.1 132,063 + EX28DRAFT_2829 0.18 -0.7 132,063 + EX28DRAFT_2829 0.18 -0.6 132,064 - EX28DRAFT_2829 0.18 +0.6 132,064 - EX28DRAFT_2829 0.18 -2.0 132,064 - EX28DRAFT_2829 0.18 -0.2
Or see this region's nucleotide sequence