Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2823

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2822 and EX28DRAFT_2823 are separated by 153 nucleotidesEX28DRAFT_2823 and EX28DRAFT_2824 overlap by 1 nucleotides EX28DRAFT_2822: EX28DRAFT_2822 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 124,485 to 126,557 _2822 EX28DRAFT_2823: EX28DRAFT_2823 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 126,711 to 127,709 _2823 EX28DRAFT_2824: EX28DRAFT_2824 - ABC-type Fe3+-siderophore transport system, permease component, at 127,709 to 128,746 _2824 Position (kb) 126 127 128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 125.950 kb on + strand, within EX28DRAFT_2822at 125.950 kb on + strand, within EX28DRAFT_2822at 126.158 kb on + strand, within EX28DRAFT_2822at 126.159 kb on - strand, within EX28DRAFT_2822at 126.159 kb on - strand, within EX28DRAFT_2822at 126.224 kb on + strand, within EX28DRAFT_2822at 126.225 kb on - strand, within EX28DRAFT_2822at 126.225 kb on - strand, within EX28DRAFT_2822at 126.493 kb on + strandat 126.555 kb on + strandat 126.555 kb on + strandat 126.607 kb on + strandat 126.608 kb on - strandat 126.658 kb on + strandat 126.662 kb on - strandat 126.686 kb on + strandat 126.692 kb on + strandat 126.693 kb on - strandat 126.734 kb on - strandat 126.777 kb on + strandat 126.778 kb on - strandat 126.778 kb on - strandat 126.778 kb on - strandat 127.062 kb on - strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.155 kb on + strand, within EX28DRAFT_2823at 127.188 kb on + strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.194 kb on + strand, within EX28DRAFT_2823at 127.308 kb on - strand, within EX28DRAFT_2823at 127.365 kb on + strand, within EX28DRAFT_2823at 127.430 kb on + strand, within EX28DRAFT_2823at 127.430 kb on + strand, within EX28DRAFT_2823at 127.431 kb on - strand, within EX28DRAFT_2823at 127.431 kb on - strand, within EX28DRAFT_2823at 127.473 kb on - strand, within EX28DRAFT_2823at 127.611 kb on - strandat 127.723 kb on - strandat 127.723 kb on - strandat 127.847 kb on + strand, within EX28DRAFT_2824at 127.847 kb on + strand, within EX28DRAFT_2824at 127.848 kb on - strand, within EX28DRAFT_2824at 127.899 kb on - strand, within EX28DRAFT_2824at 128.073 kb on + strand, within EX28DRAFT_2824at 128.188 kb on + strand, within EX28DRAFT_2824at 128.189 kb on - strand, within EX28DRAFT_2824at 128.240 kb on + strand, within EX28DRAFT_2824at 128.437 kb on + strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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125,950 + EX28DRAFT_2822 0.71 -2.3
125,950 + EX28DRAFT_2822 0.71 -0.5
126,158 + EX28DRAFT_2822 0.81 +0.2
126,159 - EX28DRAFT_2822 0.81 -0.0
126,159 - EX28DRAFT_2822 0.81 +0.7
126,224 + EX28DRAFT_2822 0.84 +1.1
126,225 - EX28DRAFT_2822 0.84 -0.4
126,225 - EX28DRAFT_2822 0.84 -1.8
126,493 + +0.0
126,555 + -0.9
126,555 + -0.8
126,607 + +0.4
126,608 - -0.3
126,658 + -0.1
126,662 - +0.1
126,686 + +0.5
126,692 + -0.2
126,693 - -1.0
126,734 - +0.5
126,777 + -0.3
126,778 - +0.7
126,778 - +0.3
126,778 - -0.6
127,062 - EX28DRAFT_2823 0.35 +0.2
127,107 + EX28DRAFT_2823 0.40 -0.4
127,107 + EX28DRAFT_2823 0.40 -0.1
127,107 + EX28DRAFT_2823 0.40 -0.4
127,108 - EX28DRAFT_2823 0.40 -0.7
127,108 - EX28DRAFT_2823 0.40 -0.1
127,108 - EX28DRAFT_2823 0.40 +0.7
127,155 + EX28DRAFT_2823 0.44 -0.3
127,188 + EX28DRAFT_2823 0.48 -0.3
127,189 - EX28DRAFT_2823 0.48 -0.6
127,189 - EX28DRAFT_2823 0.48 -0.8
127,189 - EX28DRAFT_2823 0.48 -5.0
127,194 + EX28DRAFT_2823 0.48 -0.7
127,308 - EX28DRAFT_2823 0.60 -0.4
127,365 + EX28DRAFT_2823 0.65 -0.7
127,430 + EX28DRAFT_2823 0.72 +0.3
127,430 + EX28DRAFT_2823 0.72 -0.4
127,431 - EX28DRAFT_2823 0.72 -0.1
127,431 - EX28DRAFT_2823 0.72 +0.6
127,473 - EX28DRAFT_2823 0.76 -0.8
127,611 - -0.3
127,723 - -0.2
127,723 - +0.9
127,847 + EX28DRAFT_2824 0.13 +0.6
127,847 + EX28DRAFT_2824 0.13 +1.0
127,848 - EX28DRAFT_2824 0.13 +0.3
127,899 - EX28DRAFT_2824 0.18 -0.0
128,073 + EX28DRAFT_2824 0.35 -0.3
128,188 + EX28DRAFT_2824 0.46 -0.6
128,189 - EX28DRAFT_2824 0.46 -1.5
128,240 + EX28DRAFT_2824 0.51 -0.2
128,437 + EX28DRAFT_2824 0.70 -3.8
128,438 - EX28DRAFT_2824 0.70 +0.5
128,438 - EX28DRAFT_2824 0.70 +0.5
128,438 - EX28DRAFT_2824 0.70 -0.1
128,438 - EX28DRAFT_2824 0.70 +2.9
128,438 - EX28DRAFT_2824 0.70 -0.0

Or see this region's nucleotide sequence