Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2814

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2812 and EX28DRAFT_2813 are separated by 15 nucleotidesEX28DRAFT_2813 and EX28DRAFT_2814 are separated by 1 nucleotidesEX28DRAFT_2814 and EX28DRAFT_2815 overlap by 4 nucleotidesEX28DRAFT_2815 and EX28DRAFT_2816 are separated by 69 nucleotides EX28DRAFT_2812: EX28DRAFT_2812 - Ni,Fe-hydrogenase III large subunit, at 114,997 to 116,706 _2812 EX28DRAFT_2813: EX28DRAFT_2813 - Formate hydrogenlyase subunit 4, at 116,722 to 117,645 _2813 EX28DRAFT_2814: EX28DRAFT_2814 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 117,647 to 119,461 _2814 EX28DRAFT_2815: EX28DRAFT_2815 - Fe-S-cluster-containing hydrogenase components 2, at 119,458 to 120,066 _2815 EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600 _2816 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -1 0 1 2at 116.678 kb on + strandat 116.706 kb on + strandat 116.706 kb on + strandat 116.707 kb on - strandat 116.707 kb on - strandat 116.710 kb on + strandat 116.710 kb on + strandat 116.710 kb on + strandat 116.711 kb on - strandat 116.711 kb on - strandat 116.711 kb on - strandat 116.720 kb on - strandat 116.749 kb on + strandat 117.341 kb on + strand, within EX28DRAFT_2813at 117.342 kb on - strand, within EX28DRAFT_2813at 117.345 kb on + strand, within EX28DRAFT_2813at 117.345 kb on + strand, within EX28DRAFT_2813at 117.346 kb on - strand, within EX28DRAFT_2813at 117.988 kb on + strand, within EX28DRAFT_2814at 118.291 kb on - strand, within EX28DRAFT_2814at 118.291 kb on - strand, within EX28DRAFT_2814at 118.469 kb on - strand, within EX28DRAFT_2814at 119.192 kb on - strand, within EX28DRAFT_2814at 120.085 kb on + strandat 120.086 kb on - strandat 120.212 kb on + strand, within EX28DRAFT_2816at 120.224 kb on + strand, within EX28DRAFT_2816at 120.225 kb on - strand, within EX28DRAFT_2816at 120.249 kb on - strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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116,678 + +0.3
116,706 + -0.1
116,706 + -0.6
116,707 - -0.6
116,707 - +1.0
116,710 + +1.9
116,710 + -0.1
116,710 + -0.2
116,711 - +0.4
116,711 - +0.8
116,711 - +0.5
116,720 - -0.8
116,749 + -0.1
117,341 + EX28DRAFT_2813 0.67 -0.1
117,342 - EX28DRAFT_2813 0.67 -0.6
117,345 + EX28DRAFT_2813 0.67 -0.6
117,345 + EX28DRAFT_2813 0.67 -0.7
117,346 - EX28DRAFT_2813 0.68 +0.6
117,988 + EX28DRAFT_2814 0.19 +1.2
118,291 - EX28DRAFT_2814 0.35 +1.6
118,291 - EX28DRAFT_2814 0.35 +1.1
118,469 - EX28DRAFT_2814 0.45 +0.2
119,192 - EX28DRAFT_2814 0.85 -0.2
120,085 + -0.8
120,086 - -0.4
120,212 + EX28DRAFT_2816 0.16 -0.6
120,224 + EX28DRAFT_2816 0.19 -0.6
120,225 - EX28DRAFT_2816 0.19 +0.3
120,249 - EX28DRAFT_2816 0.24 +0.3
120,330 + EX28DRAFT_2816 0.42 -0.4
120,330 + EX28DRAFT_2816 0.42 -0.9

Or see this region's nucleotide sequence