Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2657

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2656 and EX28DRAFT_2657 are separated by 77 nucleotidesEX28DRAFT_2657 and EX28DRAFT_2658 are separated by 107 nucleotidesEX28DRAFT_2658 and EX28DRAFT_2659 are separated by 2 nucleotides EX28DRAFT_2656: EX28DRAFT_2656 - Xaa-His dipeptidase, at 2,693,458 to 2,694,915 _2656 EX28DRAFT_2657: EX28DRAFT_2657 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,694,993 to 2,696,051 _2657 EX28DRAFT_2658: EX28DRAFT_2658 - Uncharacterized protein conserved in bacteria, at 2,696,159 to 2,696,359 _2658 EX28DRAFT_2659: EX28DRAFT_2659 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 2,696,362 to 2,697,585 _2659 Position (kb) 2694 2695 2696 2697Strain fitness (log2 ratio) -1 0 1 2at 2694.303 kb on - strand, within EX28DRAFT_2656at 2694.305 kb on - strand, within EX28DRAFT_2656at 2694.578 kb on - strand, within EX28DRAFT_2656at 2694.714 kb on + strand, within EX28DRAFT_2656at 2694.910 kb on - strandat 2694.913 kb on + strandat 2694.914 kb on - strandat 2694.914 kb on - strandat 2694.916 kb on + strandat 2694.961 kb on - strandat 2695.249 kb on + strand, within EX28DRAFT_2657at 2695.567 kb on + strand, within EX28DRAFT_2657at 2695.567 kb on + strand, within EX28DRAFT_2657at 2695.568 kb on - strand, within EX28DRAFT_2657at 2695.583 kb on + strand, within EX28DRAFT_2657at 2695.584 kb on - strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.815 kb on - strand, within EX28DRAFT_2657at 2695.864 kb on - strand, within EX28DRAFT_2657at 2696.051 kb on + strandat 2696.055 kb on - strandat 2696.077 kb on - strandat 2696.081 kb on - strandat 2696.083 kb on - strandat 2696.160 kb on + strandat 2696.161 kb on - strandat 2696.165 kb on - strandat 2696.165 kb on - strandat 2696.424 kb on + strandat 2696.460 kb on + strandat 2696.460 kb on + strandat 2696.460 kb on + strandat 2696.460 kb on + strandat 2696.461 kb on - strandat 2696.461 kb on - strandat 2696.461 kb on - strandat 2696.461 kb on - strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.462 kb on + strandat 2696.463 kb on - strandat 2696.463 kb on - strandat 2696.463 kb on - strandat 2696.463 kb on - strandat 2696.463 kb on - strandat 2696.463 kb on - strandat 2696.634 kb on - strand, within EX28DRAFT_2659at 2696.634 kb on - strand, within EX28DRAFT_2659at 2696.679 kb on + strand, within EX28DRAFT_2659at 2696.679 kb on + strand, within EX28DRAFT_2659at 2696.679 kb on + strand, within EX28DRAFT_2659at 2696.846 kb on + strand, within EX28DRAFT_2659at 2696.846 kb on + strand, within EX28DRAFT_2659at 2696.847 kb on - strand, within EX28DRAFT_2659at 2696.986 kb on + strand, within EX28DRAFT_2659at 2696.987 kb on - strand, within EX28DRAFT_2659at 2696.987 kb on - strand, within EX28DRAFT_2659

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,694,303 - EX28DRAFT_2656 0.58 -0.1
2,694,305 - EX28DRAFT_2656 0.58 -0.3
2,694,578 - EX28DRAFT_2656 0.77 -0.4
2,694,714 + EX28DRAFT_2656 0.86 +0.3
2,694,910 - +0.2
2,694,913 + -0.1
2,694,914 - -0.4
2,694,914 - +0.1
2,694,916 + +0.6
2,694,961 - +0.1
2,695,249 + EX28DRAFT_2657 0.24 -0.2
2,695,567 + EX28DRAFT_2657 0.54 +0.2
2,695,567 + EX28DRAFT_2657 0.54 -0.5
2,695,568 - EX28DRAFT_2657 0.54 -0.1
2,695,583 + EX28DRAFT_2657 0.56 -0.9
2,695,584 - EX28DRAFT_2657 0.56 +0.2
2,695,772 + EX28DRAFT_2657 0.74 +0.1
2,695,772 + EX28DRAFT_2657 0.74 -0.4
2,695,772 + EX28DRAFT_2657 0.74 +0.7
2,695,773 - EX28DRAFT_2657 0.74 -0.6
2,695,773 - EX28DRAFT_2657 0.74 -0.2
2,695,773 - EX28DRAFT_2657 0.74 -0.6
2,695,773 - EX28DRAFT_2657 0.74 -0.5
2,695,815 - EX28DRAFT_2657 0.78 -0.3
2,695,864 - EX28DRAFT_2657 0.82 -0.1
2,696,051 + -0.2
2,696,055 - -1.1
2,696,077 - +0.4
2,696,081 - -0.9
2,696,083 - -0.0
2,696,160 + -1.0
2,696,161 - +0.1
2,696,165 - +0.3
2,696,165 - +0.3
2,696,424 + +0.1
2,696,460 + +0.5
2,696,460 + +0.1
2,696,460 + +0.7
2,696,460 + -0.4
2,696,461 - -0.9
2,696,461 - +0.7
2,696,461 - +0.2
2,696,461 - +2.1
2,696,462 + +0.4
2,696,462 + +0.7
2,696,462 + +0.2
2,696,462 + +0.7
2,696,462 + +0.2
2,696,462 + -0.4
2,696,462 + -0.2
2,696,463 - -0.2
2,696,463 - -0.4
2,696,463 - +0.4
2,696,463 - +0.0
2,696,463 - +0.4
2,696,463 - +0.4
2,696,634 - EX28DRAFT_2659 0.22 -0.9
2,696,634 - EX28DRAFT_2659 0.22 +0.2
2,696,679 + EX28DRAFT_2659 0.26 +0.9
2,696,679 + EX28DRAFT_2659 0.26 +0.1
2,696,679 + EX28DRAFT_2659 0.26 +0.9
2,696,846 + EX28DRAFT_2659 0.40 +0.4
2,696,846 + EX28DRAFT_2659 0.40 +0.9
2,696,847 - EX28DRAFT_2659 0.40 +1.1
2,696,986 + EX28DRAFT_2659 0.51 -0.5
2,696,987 - EX28DRAFT_2659 0.51 +0.0
2,696,987 - EX28DRAFT_2659 0.51 -0.2

Or see this region's nucleotide sequence